Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03179 ATGTCACAAGGATCTCCCCCTCCTCCGCCACCAGCAACCACCGAACCCTGCAACCCACCCTCGCCGGAAAAGGAGGAAACCACCACTAACGCTGCTCCTCCTCCGGCCGGCACCCGGAACCGCCCCTCCCGCGCCTGCACCATTCGCGGCGCGGCGCGCCTCTATTCGGCGTCGCAGCCGGCGATCGAGCGCAAGCCCAAGGCCGCGGCGGCGAAGAAGGAGAAGCGCCGCGAGGACTCGCCGCCGCCGTCGCCGTCACCGCAGCAGCAATGCAGCAAGATCGTGACGCCACTGGTGGAAGCGCCCCCGCCCTCGCAGTTGCCACGGTGGAACCTCCGCTCCATGTGGGAGTTAGCTTCCATACTCAATTTCTTGCATCTATTTAGGCCTCTTTTGAATATATCAGTAGAATTCTCGGCTGAAGAGTTCGAAACAGCTCTTCTTACCCCCAATGACACATTGGGTGATATACATATGCCTTTACTAAAGGCAATCCCTCCCATTACAAGGATGGCACTCTCACGTGATACTTGGATTACTGTATTATGCAGAAAATTGAGAGATTGGTGGCACTGGGTTGCTGATGGGGATCTTCCCATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCGCTTGATCCAGGAGTCCGTGTCATTATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTACATTGACAACTCACTCAAACATGGTGTTCAACTTTCAACATTCCGTAAGGAGCGAATTGGTGGTGATTCACATGGAGTTTCTTTTTGGTATGAAGATGACCCAATTATTGGTCATAGATTGTATCGGGAAATAAGGAAAACTGAAGTGGTTCAAGTGAAGAAAGGGAAACCAAGGGGTTCCCAGGTTCTTTCTAATACAACATACCAATGGGAAACAGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTCTCTCAAGTAAAAACAGAATGGAGGCTTCTGTGGGGAAAAAGTTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGGTTAATGAAGAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTGGGTGTTGATGGGCTTGCTGCAGGGCGTTCACTTCGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAATGAGGCTATTAAGATAACCAAACAGAAACCACCGTCCCCAGAACGTGTACCCAGGAGAGAAGCAGGAACAAAACCTGAAGCTTTAACTAATGGTAAATTGAGCGGTCCTTCACACGACAGTCAACATCTGAATTTCACAATGCCATCTCCAAAATCACCTGACTTTGATGATGTGGAGGAAGAAAATCAAACTGACCCATTGGATCGAAGCAATCGGCAAAGACGGAGGCCTACACGGTATTCGGAGAAAGAGTTTGTTGAAGCAGTGTCAGATAATGAAGCAGACTTTGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCCGGAAACGTAAGCAGAGGAAGGTATCCAGTAGCTCTGCCTCTGAAGGAGATGAAGAATATCATTGGGATGAAGATAATGCTGAAGATGAAGATGAAGAAGATGAAGATTCCTTAAGTGTCAGTGAGGATAGCGACAAGCCCCGTAAATTCAAGCAATTGCCAGGCCGGACTAGGAGGGAAACTAAACTCAGGTCTGTGGGTGATATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACTAGAAACCGCATAAATTACCAACAGTATGAGATCTCTGAGTCAGAAACAGAGTTTACTAAACCTGAGAAATCTAATGCATCAGATGACCGTTCAGATCCAAGTGAGAATGGGGAATTTATGATGGAAAGTGAAGATTCAGATGACAATGATGGTGAAGATCAGGAAATGAAAGTCGAGGAGCCAGTTACTTACCCAGCAGTAGAAGAGAATGAATATCCTGCTGCAGAAGAGAATGAACAAAACCAGGACCAGCCTCCTGAAAAATCAAGTAGTCCAGTTCAGGAGGAGAAATCAAGTAGTCCGGGTCAGGAGGAAGCTGAGGGCATGACAAAAAGACGTTTCCTTGATTTGAATGAGGTTGCCCCTAGCTCAGGTTTTGATGATGTTCCAAATACAACAACGAAAGATGAAGGCAATGATGATTTCTGA 2217 0.4619 MSQGSPPPPPPATTEPCNPPSPEKEETTTNAAPPPAGTRNRPSRACTIRGAARLYSASQPAIERKPKAAAAKKEKRREDSPPPSPSPQQQCSKIVTPLVEAPPPSQLPRWNLRSMWELASILNFLHLFRPLLNISVEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVIILKALCDIRVEQEDIRSYIDNSLKHGVQLSTFRKERIGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQVKKGKPRGSQVLSNTTYQWETVATNFDEFQDVSEKLLSSKNRMEASVGKKLKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLAAGRSLRDRKPVTYTFDDYDRSINEAIKITKQKPPSPERVPRREAGTKPEALTNGKLSGPSHDSQHLNFTMPSPKSPDFDDVEEENQTDPLDRSNRQRRRPTRYSEKEFVEAVSDNEADFDSDDDIVGEAVYDEEYLRKRKQRKVSSSSASEGDEEYHWDEDNAEDEDEEDEDSLSVSEDSDKPRKFKQLPGRTRRETKLRSVGDIQSGLRRSKRATRNRINYQQYEISESETEFTKPEKSNASDDRSDPSENGEFMMESEDSDDNDGEDQEMKVEEPVTYPAVEENEYPAAEENEQNQDQPPEKSSSPVQEEKSSSPGQEEAEGMTKRRFLDLNEVAPSSGFDDVPNTTTKDEGNDDF. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03179 738 MobiDBLite consensus disorder prediction 467 493 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 494 509 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 557 581 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 1 91 - -
Seca4g03179 738 PANTHER REMODELING AND SPACING FACTOR 1 61 702 IPR028938 GO:0006355|GO:0031213
Seca4g03179 738 MobiDBLite consensus disorder prediction 510 533 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 611 633 - -
Seca4g03179 738 Pfam DDT domain 120 165 IPR018501 -
Seca4g03179 738 MobiDBLite consensus disorder prediction 696 710 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 673 695 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 66 81 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 436 451 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 405 738 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 534 556 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 20 36 - -
Seca4g03179 738 MobiDBLite consensus disorder prediction 634 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03179 Seca-Chr4 54420515 54428646 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca4g03179 DDT 5.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03179 - - gmx:100816258 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01457 12 14706766 14715233 Seca4g03179 4 54420515 54428646 PCT