Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03176 ATGGTGAGGTCTCCATGCTGTGAAAAAATCAGTGTCAAAAGAGGTATATGTTCTGCAGAAGAAGATGCAAAGATACTTGCATTTGTTTCTAAGCATGGATCTGTTTACAATTTTGTATTTGAGCCTATTTATACAGGGCTTAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACAAACTATCTCAGGCCTGATCTTAAGCATGATAACTTCACACCCCAAGAAGAAGATTTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGAAGAACAGACAATGATGTAAAGAATTACTGGAACACAAAGGTGAAAAAGAAGCTCTCTCAATTGGGGATAGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAACATTGGCGATTGCCAGAAACCGAGTACCCGAATTGGGGCTATCAACAAAGACTTCAAGAATGCAATCCTGTTAAAATCAGGGCAAGATCAAACCCTGCCACACACCAATGGCCAACCAAAGCAACCACCAACATTGCAATCCAAAGTGGAAACAACTGGAACAAGCTTTCTAGTTAGCAGAAGTCAAAGTGATAACCTCTCAATGGATCTTTCCCAACTCCAAGACATACCAATAGTGACAGGTGCCTCAAAATGCTTAGACATAGAGAATGAAACCATGCCATCATCTATGTTTGGGGAAAGTTGCTTGTCAAAAACTTCATCACCATCTACTTCTTCTGCTTGTTCAACTTCAGCACAAGAAGCCTTATCAGTGCCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTGCACCACCTGCTGATAACCAAGAACAAGAAATTGTATCTGGGTTCTTGTCAAAGGACTTGGTGGGCCAAATAGAGAATGTCACAAGACAGAGTTGGAATAAGAAAGAGGTCAATTCACAACATGCCCCAAGCAGTTACTCCCAAATTTCATCATCCTCTAATATGTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTATTTCTGAGTTTTCCTCACCTTATGGAGGAACCATCCAACTACTGA 1083 0.4118 MVRSPCCEKISVKRGICSAEEDAKILAFVSKHGSVYNFVFEPIYTGLKRCGKSCRLRWTNYLRPDLKHDNFTPQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKVKKKLSQLGIDPVTHKPFSKLIADYGNIGDCQKPSTRIGAINKDFKNAILLKSGQDQTLPHTNGQPKQPPTLQSKVETTGTSFLVSRSQSDNLSMDLSQLQDIPIVTGASKCLDIENETMPSSMFGESCLSKTSSPSTSSACSTSAQEALSVPFSWNDFLLEDAFAPPADNQEQEIVSGFLSKDLVGQIENVTRQSWNKKEVNSQHAPSSYSQISSSSNMSFVEAMLDQENEMLFLSFPHLMEEPSNY. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03176 360 CDD SANT 70 111 IPR001005 -
Seca4g03176 360 PANTHER F14D16.11-RELATED 1 360 - -
Seca4g03176 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca4g03176 360 SMART sant 13 64 IPR001005 -
Seca4g03176 360 SMART sant 67 115 IPR001005 -
Seca4g03176 360 FunFam Os07g0634900 protein 70 129 - -
Seca4g03176 360 CDD SANT 18 62 IPR001005 -
Seca4g03176 360 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Seca4g03176 360 Pfam Myb-like DNA-binding domain 18 62 IPR001005 -
Seca4g03176 360 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Seca4g03176 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca4g03176 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca4g03176 360 Gene3D - 7 68 - -
Seca4g03176 360 Gene3D - 70 129 - -
Seca4g03176 360 SUPERFAMILY Homeodomain-like 9 66 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03176 Seca-Chr4 54387281 54388852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03176 1 356 MYB Transcription Factor Family AT3G28470 40.822 1.45e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g03176 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03176 K09422 - gmx:100795381 439.113