Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03174 ATGGACCCTCCTCTCATCAACGACTCCGCATTCTCCTCCGCTTACGCTCTCGCCGAGATTTGGGGCGGAGGAATGCCTAATTTAGGTCACACTGTTCCTCCCTTTGACGCTTCCCATTCCAATTCCATTCTTCGAGATGCTTCCGCTGAAGAATCCACCGTCACCGACCAGAGTGCCGGATATCGCGCCAAGAGGAAGGATGCCACCTCCGAGGACGAGTGCTCCAAGATGGTTTCCACCACCACCACCACTGCAGCAAATGACTTGGATGATTCTGGCAATAAACGGAGAAAATTAGGGGGGTCCAAGGTTGAAAATGACGGATTGAAAGCTGAAGCTGAAGCAAGTTCAGCAGCTGGTAACAAGTCAGCTGAACAAAATACTAAACCTTCTGAGCCACCTAAGCAAGACTATATTCATGTTAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGCGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATCCAGTCACTGCAGCGTCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGACATCTACTATTGAAGGGTTTCCTTCTAAAGATGTTGCTACTCAGCCATTTGACATTTCTGGAATGATATTGGGATCACAAGCAGAAAGGGGGTATGCTCAGGGACCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTTGAGAGAGCAACATAA 813 0.4662 MDPPLINDSAFSSAYALAEIWGGGMPNLGHTVPPFDASHSNSILRDASAEESTVTDQSAGYRAKRKDATSEDECSKMVSTTTTTAANDLDDSGNKRRKLGGSKVENDGLKAEAEASSAAGNKSAEQNTKPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMTSTIEGFPSKDVATQPFDISGMILGSQAERGYAQGPHPGWLHMQIGGGFERAT. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03174 270 SMART finulus 153 203 IPR011598 GO:0046983
Seca4g03174 270 Coils Coil 194 214 - -
Seca4g03174 270 MobiDBLite consensus disorder prediction 46 136 - -
Seca4g03174 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Seca4g03174 270 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Seca4g03174 270 CDD bHLH_AtBPE_like 137 216 - -
Seca4g03174 270 Gene3D - 144 222 IPR036638 GO:0046983
Seca4g03174 270 FunFam Basic helix-loop-helix transcription factor 144 216 - -
Seca4g03174 270 MobiDBLite consensus disorder prediction 119 133 - -
Seca4g03174 270 MobiDBLite consensus disorder prediction 74 89 - -
Seca4g03174 270 MobiDBLite consensus disorder prediction 90 110 - -
Seca4g03174 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 217 IPR036638 GO:0046983
Seca4g03174 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 239 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03174 Seca-Chr4 54368647 54372426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03174 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 53.497 2.04e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03174 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03174 - - gmx:100777819 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03174 4 54368647 54372426 Seca4g03174 4 54368647 54372426 ECH