Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03169 ATGCCTCAAACCTCTGCCGTCGCCGACCCCGCCGTCTCCGGCGAGTTCATGCTGTTTGGAGTGAGAGTCGTGGTTGACTCGATGAGGAAGAGCGTGAGCTTGAACAACCTCTCGCAGTACGAACACCCTCACGATGTTCCCAACAACGACATCAAAGAAGAAACTCTCGCCGCCGGCTATGCCTCCGCCGACGACGCCACTGCCGATCCTCATATCTCCGGCAAGAATCGCGAACGCGAACGCAAGCGAGGGATTCCGTGGACGGAAGAAGAGCACAAGCTATTCTTGGTGGGATTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATATCAAGGAACTTCGTCAAAACGCGCACGCCAACGCAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGTGCCAACCTCACTCGCCGCCGCCGTAGATCTAGCCTATTTGACATCACCACCGACACCGTCTCTGCAACCCCTGTGGCGGAAGAGCAGATCCAGCATCAAGATAATGTGTCTCCTTCCCATCCTATATACCCTGCAACCACTGAAAGTAGCAACATGAATGGATTTCCAATGTTGCCCATGTACCCTATGGGTGTTGGTTCTGGGGCCATTTCAGTTCAATCTGGGAATCCAATGGAGAAACTCACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCAAAGAAGCTATCCTGTACAATTCCTGTTGTTGCAGATCATAGAGCTTCTTCCAGGGTGTCTGATATCACTGCCAGTTTGAGTTCAGCTGTTGATCCAACAACACTGTCCCTTGGGCTATCCTTGTCATCTGGTCAAAGACAAGCATCATCAAGACATTCAGCTTTACATGCAATGCCATGCCTCAAAATGGAGATAGCATCATAA 885 0.5107 MPQTSAVADPAVSGEFMLFGVRVVVDSMRKSVSLNNLSQYEHPHDVPNNDIKEETLAAGYASADDATADPHISGKNRERERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRANLTRRRRRSSLFDITTDTVSATPVAEEQIQHQDNVSPSHPIYPATTESSNMNGFPMLPMYPMGVGSGAISVQSGNPMEKLTLGQGNVEQNGPKKLSCTIPVVADHRASSRVSDITASLSSAVDPTTLSLGLSLSSGQRQASSRHSALHAMPCLKMEIAS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03169 294 FunFam transcription factor MYB1R1 85 136 - -
Seca4g03169 294 PANTHER TRANSCRIPTION FACTOR KUA1 15 222 - -
Seca4g03169 294 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Seca4g03169 294 Gene3D - 85 137 - -
Seca4g03169 294 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Seca4g03169 294 SMART sant 83 133 IPR001005 -
Seca4g03169 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Seca4g03169 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Seca4g03169 294 CDD SANT 86 131 IPR001005 -
Seca4g03169 294 ProSiteProfiles SANT domain profile. 87 135 IPR017884 -
Seca4g03169 294 SUPERFAMILY Homeodomain-like 81 135 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03169 Seca-Chr4 54311824 54314552 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g03169 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03169 - - gmx:778057 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03169 4 54311824 54314552 Seca4g03169 4 54311824 54314552 ECH
Seca12g01476 12 14883425 14885303 Seca4g03169 4 54311824 54314552 PCT