Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03159 ATGGCAGCCGCCGGCGATGTTCTCAGGCAGAGTTTCCCGGAAGTGAGTTCAGGGGAACTTCACGTGCTTGCTGTTGATGACAGCCACGTGGACCGTAAGGTCATTGAACGGTTGCTCAAAATCTCATCTTGCAAAGTGGATTCTGAAGGTTATTGGAACTGGGTTTTTGCAGTGACGGTGGTAGAGAGTGGAACCAGAGCTCTACAGTATCTTGGGTTGGATGGGGATAAGAGTTCCATTGATATTGATACTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCAGGGATGACTGGATACGAACTACTCAAAAGGATAAAGGAGTCATCTGTTTTCAGAGAGATTCCGGTGGTGGTTATGTCCTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAGTTGTCTGATGTAAAAAGGTTAACAAATTTCATCATGAGAGGTGAAGGAAAGAAGGGAGAAAAAAGATCTCAAAAAAGAAGCCGATCAGAGGATTGCAATCCATCTCTATCATCATTGTCCTCCAAGAAGTCTAGATTGTGA 585 0.4393 MAAAGDVLRQSFPEVSSGELHVLAVDDSHVDRKVIERLLKISSCKVDSEGYWNWVFAVTVVESGTRALQYLGLDGDKSSIDIDTVKVNLIMTDYSMPGMTGYELLKRIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTNFIMRGEGKKGEKRSQKRSRSEDCNPSLSSLSSKKSRL. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03159 194 CDD REC_typeA_ARR 22 155 - -
Seca4g03159 194 MobiDBLite consensus disorder prediction 178 194 - -
Seca4g03159 194 Pfam Response regulator receiver domain 22 153 IPR001789 GO:0000160
Seca4g03159 194 SMART REC_2 20 156 IPR001789 GO:0000160
Seca4g03159 194 SUPERFAMILY CheY-like 19 161 IPR011006 -
Seca4g03159 194 Gene3D - 20 193 - -
Seca4g03159 194 ProSiteProfiles Response regulatory domain profile. 21 160 IPR001789 GO:0000160
Seca4g03159 194 MobiDBLite consensus disorder prediction 163 177 - -
Seca4g03159 194 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 186 IPR045279 GO:0009736
Seca4g03159 194 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03159 Seca-Chr4 54087382 54090547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03159 16 191 Response Regulator Gene Family AT5G62920 64.407 1.47e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g03159 Response_reg 6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03159 K14492 - gmx:100306152 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03159 4 54087382 54090547 Seca4g03159 4 54087382 54090547 ECH