Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03151 ATGTCGTCTTCTACAACCTCTTCCAGGCACCATACCTATAATCGAAAGCAGAAATCTCTCGGCCTCTTGTGTACCAATTTCTTGAGCTTGTATAACAAAGACGGCATCCACTTGATCGGTCTCGACGACGCCGCTTCACGATTAGGGGTTGAACGACGCCGGATCTATGATATAGTTAATGTCTTGGAGAGTGTTGGTGTGCTTGCTAGAAGAGCTAAGAATCAATACACTTGGAAAGGATTTGCGGCCATTCCCGGAGCTTTACAGGATCTCAAGGCTGAGGGTTTGAGGGAGAATCCCACTACTTTCGATGTTGCCAATGACAGTGCAAAAATGTCTGATGACGAGGATGATGCAGAAGCAATATCCAATCCCAGTACTGAAAGTCAGAATGACAAGTCAAATGCTGATTGTGCCAATATTGTCAAATCTTCGAAGAATGGTTTTGCAGAAAACAGAAGGGAAAAGTCTCTGGCACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCTGCAAAATTGTTGCTGGGAAATGCCCATAACACATCAATCATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTTCTATCCTCCATGAACCTAATTGAGAAGACCCATACAGCAGACACAAGAAAACCAGCATTCAGGTGGTTGGGTTTGAAAGGGAAGACATGGAGCGACTCGGTTGACTCAGCTCACAATTCAAATGTCAACGAGTCAAGGAAAAGGATGTTTGGAAATGACGTCACAAACATAAGTTTTAAGAGGAATAAAGTTGATTCGTCCATGGATGGGGGATTTTACAAGAACTCTAATATGCAAAATAAACAGGAAAATCATAGTTGCCGAGCCCAACCAGGGACAAGCGACTCAAAACAAGATGCAAAACAGACTTCAAGTTGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGCGCCTAAAGTTGGAGCCTCTGATAATGTTAAGCAGGCGCATGATTGGGAGAGTCTTGCAGCTGCCCATTGTCCTCAGTATCAAAATCAAGTGGCTTCAGCCATTGCAGTGCAAACTACAAACATACGAGGGACAGGGGCGGGAGCCATTGTTGTGTAA 1134 0.4365 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKDGIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLARRAKNQYTWKGFAAIPGALQDLKAEGLRENPTTFDVANDSAKMSDDEDDAEAISNPSTESQNDKSNADCANIVKSSKNGFAENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGLKGKTWSDSVDSAHNSNVNESRKRMFGNDVTNISFKRNKVDSSMDGGFYKNSNMQNKQENHSCRAQPGTSDSKQDAKQTSSCYQFGPFAPAYAPKVGASDNVKQAHDWESLAAAHCPQYQNQVASAIAVQTTNIRGTGAGAIVV. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03151 377 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Seca4g03151 377 Gene3D - 10 82 IPR036388 -
Seca4g03151 377 Gene3D - 149 235 IPR036388 -
Seca4g03151 377 FunFam E2F transcription factor-like E2FE 149 235 - -
Seca4g03151 377 MobiDBLite consensus disorder prediction 277 310 - -
Seca4g03151 377 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Seca4g03151 377 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Seca4g03151 377 MobiDBLite consensus disorder prediction 104 136 - -
Seca4g03151 377 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Seca4g03151 377 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Seca4g03151 377 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Seca4g03151 377 PANTHER TRANSCRIPTION FACTOR E2F 5 352 IPR015633 GO:0000978|GO:0006357
Seca4g03151 377 FunFam E2F transcription factor 8 10 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03151 Seca-Chr4 53999613 54009761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03151 10 356 E2F-DP Transcription Factor Family AT3G48160 57.584 7.76e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca4g03151 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03151 K09391 - gmx:100818090 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03151 4 53999613 54009761 Seca4g03151 4 53999613 54009761 ECH
Seca12g01485 12 15059056 15065143 Seca4g03151 4 53999613 54009761 PCT