Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03150 ATGGAAAGTGATGCTAAGGGATGTGAGGTCATTGTCAGTGGAAAATTGAGAGCCCAGAGGGCCAAATCCATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGGCAACCAGTCAAGGATTACATTGACTCTGCAGTGAGGCATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGATCGGGATCCTAAAGGGAAACAGGGTCCTAAAACGCCCCTCCCTGATATTGTCACAATCCATGCTCCAAAAGAGGAAGAAGAATACACCCAGTCTGCTGCTGTTTTGTCAACTGATATTGAGATTTGGCGGAAACACCTTTTAGGAAAAGCATTGAATCACCTTCTGCATGGAAATCTCCTTGGTTCTTCAATGCTTTTCTGTCTAGCCCCAGATTTGATACTGAAATTATAA 426 0.4413 MESDAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDRDPKGKQGPKTPLPDIVTIHAPKEEEEYTQSAAVLSTDIEIWRKHLLGKALNHLLHGNLLGSSMLFCLAPDLILKL. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03150 141 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 1 76 - -
Seca4g03150 141 Gene3D - 1 94 IPR036419 -
Seca4g03150 141 SUPERFAMILY Ribosomal protein S3 C-terminal domain 1 65 IPR036419 -
Seca4g03150 141 ProSitePatterns Ribosomal protein S3 signature. 21 57 IPR018280 -
Seca4g03150 141 Pfam Ribosomal protein S3, C-terminal domain 1 62 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03150 Seca-Chr4 53996899 53997820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03150 1 101 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 79.208 2.60e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03150 K02985 - gmx:100795581 195.667