Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03149 ATGTCTTCTTCTGCTATTGTTATGTCTCCTCCAAAGCATGATGTGTTTCTCAGCTTCAGAGGGGAAGACACCCGTGACAACTTCATTAGTCATCTCTATGCAGAACTTCGCAGGAAAAAGATTGAAACATTCATTGATTACAGACTCGGCAGAGGCGAAGAGATTTCCCTGGCACTCCACAAAGCAATAGAAGAATCAATGATTTATGTCATTGTTTTCTCTGAACACTATGCTTCTTCCACGTGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAAGAAGAGATTTGGCAGGGATGTCATACCAGTTTTCTATAAGGTGGATCCATCAAATGTTTGGCACCAGAGAGAAACTTATGGAGAAGCTTTTATTAAGCATGAACAGCGATTTAAGGACAAGGTGCATGCGTGGAAAGCTGCTCTAACTGAAGCCGCAGGACACTCAGGCTGGGATTCACAAGTAACCAGGCCAGAATACACACTTGTTGCAGGCATTGTGAAAGATATTTTGAGAAAATTGAATCATTCTTTCTCAAGTGATTATCAAGGAATGATTGGAATTGACAATCATATTGCACAAATCCAGTCCTTGCTGCACCTTGAGTCAGGGGGTGTTCGGATCATTGGAATTTGGGGCATGGGAGGGATAGGTAAAACAACTATTGCTAGTGCAATATATCACAAACTGGCAACTCAATTCAATTCCACAAGCTTTATTGTAAATGTTCAAGAAGAAATAGAAAAATATGGAATAAGCCCTACACGAAGCAAATATTTATCAGAGCTTCAAGATGACTCTGGATTAAGTTTTTCATATGAAAGGAGCGGACGGGAAAAGGTTCTCCTTATTCTTGATGGCCTGAACAGTTCGGGTCAATTTAAAGAATTAATTCTACCACTTAACTTACCTCAGGGCAGCAGAATTATTCTCACTAGTAGAGACATGCAAGAGCTGAAGAATGCCAGAGCTGATCAAATATATGAAGTCAAGGAGATGAATTTTCATGATTCCCTACAACTCTTTAGTTTAAATGCCTTTAAACAAAACTATCCCATAGAAACTTATACTGGCTTGTCAGAAAAAGTGATAAATTATGCTAAAGGGATTCCATTAGCTCTCAAAGTTTTGGGATCATTGCTTTATGGTAGAACAAGGGAAGCATGGGAAAGTGAGTTGCAAAAGCTGGAAAAGCTCCTGGATCTTAAAATCTTCAATGTGTTGAAATTAAGTTATGATGGGCTTGATGATGAACAGAAGGACATATTTCTTGACATAGCTTGCTTCTATAAAGGACATTTGGAGAAAAGTGTAGCACAAACACTAGATAGCTGTGGTTTCTCTGCTGAGATTGGAATGGATGTTCTTAAAGATAGGTGTCTTATATCTGTTTTGGAAGGTAGAATCATGATGCATGATCTTATACAGGAAATGGGAAAAGAAATTGTTCGGCAACAATGTGTCAATAATCCTACAAAACGCAGTCGATTATGGAAGGATAAGGAAATTTGTCATGTTTTGAGACAGAACAAGGGGACAGATGCTATCCAGTGTATATTCCTTGACACATGCAAAATTAAAAAAATTCAACTACATGCTGAAACTTTCAAGAAGATGCATAGTCTGAGAATGCTCCAATTCTACAAGTCTTCTGGCTTTTGGGAACAATCAAATGTGATCCTTCCTGCATTTCTTGAAAGTCTTCCGGATAATTTAAAATTTCTTCGTTGGGATGGCTTTCCTCAAAGAACTTTGCCGCTGGATTTTTGCCCAGAAAATCTTGTTAAACTTGATATGCGTAATAGCCATCTTGAACAACTTTGGGAGAGAGATCAGGATTTACCGAATTTGAAAAGCCTCAATCTTAGTTTTTCTCGGAAGCTGATTCGAATACCAGACCTCTCTCTATCTCCAAATATTGAAGAAATAATTCTTAGTCATTGTGAAAGCTTGGTTCAAGTTTACTCTTCGAGATTCCTCAGAAAACTCAACTGTTTATTTTTAGATGGTTGTGTTGAGCTTAGGGATTTAAACCTTCCTAGCAACATTCTATCGGGATCTTCTGGATTAGTTGTTCTATGTAAGTGTTGCAAACTTGAAACATTTTCAATCAGCAGTAGAACTGAGGCGGTTCAATCATACAATTGTTTGCAATTGCATTGTGATGGATTCTGGGGAGCAGTTGAAATTTTCCGTGAAGCAAAAGTTAACGCAAAAGTTAACCTATATAATGGAAATCTTATCCAGTTCAATCGAAAAGGTGGCATGAGATATTCTTCAGATACTTTTGACCCCATTATGTGTGCTGACAGATATGAAAAAAAAGAAGTGGCAGATAATGTACGCTTACTAAACATGAAAGTGATGATAGAAACTATGCCTTCACTATTTCCAAGTCTCAATGAGCTTTGTTGGTTAGATATATCTGATTGTGAATCCCTTACAAGCCTTCCAATTGACCTTTGTAAGTTGAAATTTCTAAGAAGACTTTATCTCCGTGGTTGCTCAAATTTGGAAAATTTCCCTGAAATCAAGGAGACAATGGAAAATTTAACGGTGCTCATCTTAGATGAAACAGCAATAAAGGAGCTACCTTCATCCTTGCACCATTTGGTAGGGCTTGAAGTATTGAGCTTGCATAATTGCTCGAGGCTTGAGATTATTCCATCTTCCATTGGAAGTCTCAGCAAACTCTGCAAGTTAGACCTTACTTGCTGTGAATCACTTGAGACTTTTCCAAGCAGCATTTTCAAATTGAAGTTAACAAAACTTGATTTGCGTGGTTGCACAATGCTAAAGAGCTTCCCAGAGATCTTGGAGCCTGCAGAAAGTTTTGCTCAAATTAGCTTAACAAAAACAGCAATTAAAGAACTACCTTCATCATTGGACTATTTGGCTGGGCTTGGAACCTTGCGTCTGAACCTATGCAGTGATCTGGAGTCACTTCCAAATAGCATTGTTAATCTAAACCATCTCTCTGAGCTTGATTGTTCAGGCTGTGGCAAATTAACAGAAATCCCAAATGATATAGGTCGCATGTCATCATTAAAAGAATTTTCACTGCAAGGAAGCAGTATTGTGAACCTTCCTGAGAGTATTGCTCTTCTTTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGTATCCCACAACTTCCACTATTTCTGAAACAGTTATTGGCGCTTGATTGCCCATCCATTAGAAGAGTGGTGTCAAATTTAAGGTTTGAACTCCCATCAGATTCCAAAGAGGGTACCTTTAAATTTCATTTCACCAATAGTGAAGAACTTGATCCAAGTGCTCAAAGTAATATTATGGCTGATGCATGGCTTAGGATCACTGATGATGCATATAGGTCTGTGTTCTTTTGTTTTCCAGGAAGTACAGTTCCTCATTGGTTCCCTTATCGCTGTGGGGGACGTTCAATAACTGTGAATAAGGATTCTCTAAATTGGTGCAATGAAAATAGGCTCATTGGTTTCGCCCTATGTGTCGTTTTGGGACTTAAAGATATGGATGATACAGAACGAAGATGTGGATCTGGTGTTTTTAGATGCAGATTAACATTTGAATATGATGGTTGGAAAAACAGTCTTCCCAACCATGATGAGCTAAGAGACTATTTCTATTGGAAGGGTCGAGAGAGAATCAGAAGTACTCCGAATGGTTATGACATTTCCATTGGTCCACCATGTCTGTATAGGTTGACTTGCTTTGTTCTCTCCTTAACCACAGTTTCCTCAAACCGTTACAATTTTGGCTCCATAAACTTTCAAGCATCAAGACAGGATGTCGCCAAATTTGGTGGTTTGCAATACAGCAAGGGCAATATCAATTCTTGA 3855 0.3839 MSSSAIVMSPPKHDVFLSFRGEDTRDNFISHLYAELRRKKIETFIDYRLGRGEEISLALHKAIEESMIYVIVFSEHYASSTWCLDELTKILECKKRFGRDVIPVFYKVDPSNVWHQRETYGEAFIKHEQRFKDKVHAWKAALTEAAGHSGWDSQVTRPEYTLVAGIVKDILRKLNHSFSSDYQGMIGIDNHIAQIQSLLHLESGGVRIIGIWGMGGIGKTTIASAIYHKLATQFNSTSFIVNVQEEIEKYGISPTRSKYLSELQDDSGLSFSYERSGREKVLLILDGLNSSGQFKELILPLNLPQGSRIILTSRDMQELKNARADQIYEVKEMNFHDSLQLFSLNAFKQNYPIETYTGLSEKVINYAKGIPLALKVLGSLLYGRTREAWESELQKLEKLLDLKIFNVLKLSYDGLDDEQKDIFLDIACFYKGHLEKSVAQTLDSCGFSAEIGMDVLKDRCLISVLEGRIMMHDLIQEMGKEIVRQQCVNNPTKRSRLWKDKEICHVLRQNKGTDAIQCIFLDTCKIKKIQLHAETFKKMHSLRMLQFYKSSGFWEQSNVILPAFLESLPDNLKFLRWDGFPQRTLPLDFCPENLVKLDMRNSHLEQLWERDQDLPNLKSLNLSFSRKLIRIPDLSLSPNIEEIILSHCESLVQVYSSRFLRKLNCLFLDGCVELRDLNLPSNILSGSSGLVVLCKCCKLETFSISSRTEAVQSYNCLQLHCDGFWGAVEIFREAKVNAKVNLYNGNLIQFNRKGGMRYSSDTFDPIMCADRYEKKEVADNVRLLNMKVMIETMPSLFPSLNELCWLDISDCESLTSLPIDLCKLKFLRRLYLRGCSNLENFPEIKETMENLTVLILDETAIKELPSSLHHLVGLEVLSLHNCSRLEIIPSSIGSLSKLCKLDLTCCESLETFPSSIFKLKLTKLDLRGCTMLKSFPEILEPAESFAQISLTKTAIKELPSSLDYLAGLGTLRLNLCSDLESLPNSIVNLNHLSELDCSGCGKLTEIPNDIGRMSSLKEFSLQGSSIVNLPESIALLSSLKSLDLSDCKKLECIPQLPLFLKQLLALDCPSIRRVVSNLRFELPSDSKEGTFKFHFTNSEELDPSAQSNIMADAWLRITDDAYRSVFFCFPGSTVPHWFPYRCGGRSITVNKDSLNWCNENRLIGFALCVVLGLKDMDDTERRCGSGVFRCRLTFEYDGWKNSLPNHDELRDYFYWKGRERIRSTPNGYDISIGPPCLYRLTCFVLSLTTVSSNRYNFGSINFQASRQDVAKFGGLQYSKGNINS. 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03149 1284 SUPERFAMILY RNI-like 572 857 - -
Seca4g03149 1284 Pfam C-JID domain 1129 1210 IPR045344 -
Seca4g03149 1284 Gene3D - 8 176 IPR035897 -
Seca4g03149 1284 Gene3D Ribonuclease Inhibitor 778 920 IPR032675 -
Seca4g03149 1284 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 176 - -
Seca4g03149 1284 Gene3D Ribonuclease Inhibitor 921 1075 IPR032675 -
Seca4g03149 1284 SMART till_3 12 148 IPR000157 GO:0007165
Seca4g03149 1284 Pfam Leucine Rich Repeat 593 612 IPR011713 -
Seca4g03149 1284 Gene3D - 177 328 IPR027417 -
Seca4g03149 1284 Pfam NB-ARC domain 190 398 IPR002182 GO:0043531
Seca4g03149 1284 PRINTS Disease resistance protein signature 275 289 - -
Seca4g03149 1284 PRINTS Disease resistance protein signature 208 223 - -
Seca4g03149 1284 PRINTS Disease resistance protein signature 367 381 - -
Seca4g03149 1284 PRINTS Disease resistance protein signature 612 628 - -
Seca4g03149 1284 SUPERFAMILY L domain-like 788 1070 - -
Seca4g03149 1284 Gene3D - 332 416 IPR042197 -
Seca4g03149 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 426 IPR027417 -
Seca4g03149 1284 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 151 IPR035897 -
Seca4g03149 1284 ProSiteProfiles TIR domain profile. 11 174 IPR000157 GO:0007165
Seca4g03149 1284 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 690 IPR044974 GO:0006952
Seca4g03149 1284 Gene3D Ribonuclease Inhibitor 500 724 IPR032675 -
Seca4g03149 1284 Pfam TIR domain 12 184 IPR000157 GO:0007165
Seca4g03149 1284 SUPERFAMILY "Winged helix" DNA-binding domain 403 507 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03149 Seca-Chr4 53984809 53990424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03149 802 971 WRKY Transcription Factor Family AT4G12020 36.471 1.33e-17 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03149 - - aip:107633930 1413.67