Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03132 ATGGGTGGCAATGGTAAGCACAGGTGGAAAATCTCCTTCCATCGTTCTTCCTCTCACTCAAAGCTGGAACCCAAGCACCCTCCCAAGGAGTTCCTATGCCCGATTTCCGGGTCATTAATGTCCGACCCGGTCGTCGTCGCTTCGGGTCAAACATTCGAACGCGTCGCCGTTCAAGTCTGTACGGATTTAAAGTTCATCCCCAACCTAGAAGACGGGTCCCGACCCGATTTCTCAACGGTCATCCCCAATTTGGCCATCAAAACGACGATTCTCAACTGGTGCGACAAATCCGGCACCCAACGCCCTCACGCACCGGATTACGCCTCCGTGGAGAGGGTCGTCCGGGAAGCAATGGCGGCGGCGCAGGAGGACCGAATTAGGGTTTCTGAGAGGGAGCTGCTGAAAGCCGTGGCGGATAATCCTCCGGTAATTTTCTCCCACGCCGCCACCGAGTTAGGGCCTCGAGTCAACCACTTCAACTCGGGGTCGTCCTCGGAGGAATCGGTTATCATCGCGGCGAGTCCAGGAACACCCTTGCCTCTCACGCTTCGCCCAACGTGCTTCTCTTCCTCTTCCTCTTCCTCCTGTGAGATCGAAATCCAAAACCCTAGCGTTCCAGCCTCGGAAGAAGAAGAGAAATTAGTGAAGAAGATGAAAAGTAACGAGGTGTTCGAGCAAGAAGATGGCGTGGTCTCGCTGAGGAGCATCACGAAGAACAGAGAAGAAGCTAGGGTTTCGCTCTGCACGCCGCGGATTCTTTCGGCGCTGCGTCCGTTGATTCCATCGCGATACGTCGTCGTTCAGGTCAACGCTGTAGCTTCTCTGGTCAACCTTTCTCTGGAGAAATCGAATAAGGTGAGGATCGTGAGGTCAGGGTTCGTTCCTTATCTCGTCGACGTGTTGAAGGGAGGATTCAGTGAATCGCAGGAGCACGCTGCGGGTGCGCTCTTTAGCTTGGCTTTGAATGATGATAACAAGATGGCCATTGGAGTCCTCGGCGCGTTGCAGCCACTAATGCACGCGCTGAGGTCAGAGTCTGAGCTGACTCGGCATGACTCGGCGCTGGCGCTGTACCACCTCACGCTGGTTCAGAGCAACCGAGTCAAGATGGTGAAACTCGGGGTGGTCCCCACGCTGCTTTCGATGGTGATGACGGGGAACCTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTCAATGGAGGGACGGACGGCGATGCTGGATGCCAACGCGGTGGAGTGTTTGGTGGGGTTGCTGAGGGGGAAGGAGTTTGACTCAGAGGCGACTCGGGAGAATTGTGTGGCGGCGTTGTATGCGCTGAGTCATGGGAGCTTGAGGTTCAAAGGTTTGGCGAAGGAGGCAAGGGCTGTGGAGGTTTTGAGGGAGATTGAGGAAACGGGAACGGAGAGGGCTAGGGAGAAGGCTCGGAGGGTGTTGCAGATGATGAGGACTGTGGGAGATGATGAGGATCAAGATGGGTCTGAGTTTGATAGCCTTTTTGAATCGGGTGGGTTGGCTCGAACTCGCTACCGAGTTGCTGGTGCCAGGAGTACCACCAACCTTGTCAACACAACCACATTTTAG 1593 0.5556 MGGNGKHRWKISFHRSSSHSKLEPKHPPKEFLCPISGSLMSDPVVVASGQTFERVAVQVCTDLKFIPNLEDGSRPDFSTVIPNLAIKTTILNWCDKSGTQRPHAPDYASVERVVREAMAAAQEDRIRVSERELLKAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIAASPGTPLPLTLRPTCFSSSSSSSCEIEIQNPSVPASEEEEKLVKKMKSNEVFEQEDGVVSLRSITKNREEARVSLCTPRILSALRPLIPSRYVVVQVNAVASLVNLSLEKSNKVRIVRSGFVPYLVDVLKGGFSESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRSESELTRHDSALALYHLTLVQSNRVKMVKLGVVPTLLSMVMTGNLASRVLLILCNLAVSMEGRTAMLDANAVECLVGLLRGKEFDSEATRENCVAALYALSHGSLRFKGLAKEARAVEVLREIEETGTERAREKARRVLQMMRTVGDDEDQDGSEFDSLFESGGLARTRYRVAGARSTTNLVNTTTF. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03132 530 SMART arm_5 240 280 IPR000225 GO:0005515
Seca4g03132 530 SMART arm_5 281 321 IPR000225 GO:0005515
Seca4g03132 530 SMART arm_5 363 401 IPR000225 GO:0005515
Seca4g03132 530 SMART arm_5 402 445 IPR000225 GO:0005515
Seca4g03132 530 SMART arm_5 322 362 IPR000225 GO:0005515
Seca4g03132 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 106 IPR013083 -
Seca4g03132 530 Gene3D - 390 492 IPR011989 -
Seca4g03132 530 Gene3D - 209 389 IPR011989 -
Seca4g03132 530 FunFam RING-type E3 ubiquitin transferase 209 485 - -
Seca4g03132 530 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Seca4g03132 530 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Seca4g03132 530 PANTHER U BOX DOMAIN-CONTAINING 21 486 - -
Seca4g03132 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 329 IPR000225 GO:0005515
Seca4g03132 530 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g03132 530 SUPERFAMILY ARM repeat 212 485 IPR016024 -
Seca4g03132 530 FunFam RING-type E3 ubiquitin transferase 9 101 - -
Seca4g03132 530 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Seca4g03132 530 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Seca4g03132 530 SUPERFAMILY RING/U-box 14 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03132 Seca-Chr4 53658718 53660310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03132 1 517 U-box Gene Family AT5G65200 59.341 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03132 - - gmx:100784564 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02831 10 37024404 37026083 Seca4g03132 4 53658718 53660310 ECH
Seca4g03132 4 53658718 53660310 Seca4g03132 4 53658718 53660310 ECH