Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03130 ATGTACCATCTAGAAATTGCCAATCGACTTGTTCGGCCTTTATGGTTGATCTCACAAGTCAATCCTTGGCAAACCTCTGGTGGAGTCGACTTCTTTGACCTCTTTCGACAACCTCATAGGTTTCGAAGTGGAGGGGGAAGCTACTCAGAAGACGAAGCAAGAGCGCAGATCTGGTACTCAAGACGCCCCAAGGTTGTATTTGTGGAGAACACAATGGAAGGCTCCAATCAAGAATCTGAACATAATGGTGGTCCATCTTATGAACACGGTGATAGTGGTTCATTTTCGCAAGAGGCCGAAGACAATAATTGTGGATACCTGGTGAAGCAAGGCGGTTGTGGTGTGTATTTGGTGGATGGAGAATTTGATGAAAATTGGAATGAAGGAGAAAATAATGATGATGGTGATGAAGTTTCTAAAACTAGTATTGATGGTTTAGAAGATATCAAAGCAATTGATTTGCATAAATTCAGCCCCCATCAGATAAGTAATTTCGATTTCTGTAGTGTTGATGTTGCATGCCTATTTTACTTTTGGTATGCTTGGGCTAACGGATTTGCATCTCGACGGGGGAAGGTAATCACGAGTAAGAAGACTGGTATGGTGTTGCAACAAAATTTCTTTTGTAATAAGGAAGGCATACGTCTAGAGGATGGTGTCCCATTGGAGGAAAAACAACGTGAGCCGAAAGCTGTAACTAGATGTGGGTGCCGAGCAGAATTTCGGGCACATGTTGACATAAATACAGGGCGGTGGTATTGTTCTTACTTTTATAATAAGCATAATCATGAGTTGCTGGATCCAATATTTTGTTCAATGTTACCGGCACATAGGAAGATGACCTCTAGTGATGTTAATCAGATGAACAATATGCTTAAAGTCGGCATTGGACCTCCTCAAATCTTTGAGTCGTTTGCTAATCAGTGTGGGGGTTATGAAAAGATAGGTTTCCGGAAAAAAGATATATATAACCAGATCATTCAACAACGGCGTATGCAACAGTCAGATGCCGCAGAAGCAGTAAAGTTTTTGCGTGGCTTGGGACAAAATGACCAGTCCATGTTTTTTAGACATACGACCAATGAGGATGGTAGGTTGGAGCACTTGATATGGTGTGATGGTGTAATGCAACTGAATTACCAAGTGTTTGGGGAGGTGCTAGCCTTTGATGCAACATATGGAAAGAACAAATATCGGCTACCTCTTGTTGTTTTTTCTGGTGTAAATCATCATAATAGAACAACAATCTTTGTTGCTGCTGTAGTTGCTAATGAAACTGAAGAAACCTATACATGGTTGTTGCGCCAGTTTCTAGAAGCCATGAAAGGAAAACCTGGTTTCACTGCTGACTTTGAAAGTTGTATGTTGGCAAATTATGAAGTTGACAAGTTTCAAAGAAAATGGAATGAACTGGTTGTTAAATATGGTGTTGAAGATAAACCATGGATTAGGGACATGTATGAGAAGAGAGAAATGTGGGCCACCGCTTACATGAGGGGGAAATTTTTTGCTGGGTTTAGGACAACCTCGAGGTGTGAAGGTTTGCATTCTGAATTGTCAAAGTTTGTGCACTCACAACATAATCTCATTGACTTCTTACAACATTTCTTTCAATGTGTTGATCATATGCGGTTTAAGGAGATTGAAGATGACTTTGCATCAATACATGGTGATCCAGTGCTTCAAACTAGTCTCCAAGATCTTGAAGAGTCAGCTGCTAAGTTTTTAACTAGGGAGGTGTTTTTCCTATTTCGCCCTGTGCTTCAGAAGACAGCCTTGATATGGACGAAGGGTGCCAAAGACATGGTGAATGTGAGTAGTGGTCAGTCATCTGCTGGTTGGGATTCACAGAAAGTTTTCAGGGTTGAGGACCTAAATTTCTTGTACAGGAAATTATCAGTTGTAAATGGTGATACAATTGAAGATTATTATGACACTCGTGAGAAACTACTGGAAGAATATGAAATGAAGAAGGCAAAGAAAGCACAGCAAAGGGCTGCCAATTCTGAACCAGTAGCTTCTGCTAACGAAGGTTTGAGGGATCCATTGCGTGCTAGAGATAAGGGAACTAGTCGAGCAAGTATGTCAGTCGGAGGCTTAAGAGTTAAGCGGACAACAAGGTGCTCGTGGTGTAGGGTTGCAGGCCATAATCGAGTGACTTGTCCACTCCGAGCACAGAGTCAACAGATGAGCCAAGCAGAACCTCAAAGCTCAATGTTTGATGAGGAAGAAGGCAACTATTATAATTGTGGAACTATATAA 2262 0.4134 MYHLEIANRLVRPLWLISQVNPWQTSGGVDFFDLFRQPHRFRSGGGSYSEDEARAQIWYSRRPKVVFVENTMEGSNQESEHNGGPSYEHGDSGSFSQEAEDNNCGYLVKQGGCGVYLVDGEFDENWNEGENNDDGDEVSKTSIDGLEDIKAIDLHKFSPHQISNFDFCSVDVACLFYFWYAWANGFASRRGKVITSKKTGMVLQQNFFCNKEGIRLEDGVPLEEKQREPKAVTRCGCRAEFRAHVDINTGRWYCSYFYNKHNHELLDPIFCSMLPAHRKMTSSDVNQMNNMLKVGIGPPQIFESFANQCGGYEKIGFRKKDIYNQIIQQRRMQQSDAAEAVKFLRGLGQNDQSMFFRHTTNEDGRLEHLIWCDGVMQLNYQVFGEVLAFDATYGKNKYRLPLVVFSGVNHHNRTTIFVAAVVANETEETYTWLLRQFLEAMKGKPGFTADFESCMLANYEVDKFQRKWNELVVKYGVEDKPWIRDMYEKREMWATAYMRGKFFAGFRTTSRCEGLHSELSKFVHSQHNLIDFLQHFFQCVDHMRFKEIEDDFASIHGDPVLQTSLQDLEESAAKFLTREVFFLFRPVLQKTALIWTKGAKDMVNVSSGQSSAGWDSQKVFRVEDLNFLYRKLSVVNGDTIEDYYDTREKLLEEYEMKKAKKAQQRAANSEPVASANEGLRDPLRARDKGTSRASMSVGGLRVKRTTRCSWCRVAGHNRVTCPLRAQSQQMSQAEPQSSMFDEEEGNYYNCGTI. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03130 753 MobiDBLite consensus disorder prediction 73 96 - -
Seca4g03130 753 Coils Coil 640 667 - -
Seca4g03130 753 Pfam MULE transposase domain 386 443 IPR018289 -
Seca4g03130 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 160 600 IPR031052 GO:0006355
Seca4g03130 753 MobiDBLite consensus disorder prediction 662 697 - -
Seca4g03130 753 Pfam FAR1 DNA-binding domain 176 266 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03130 Seca-Chr4 53642855 53646854 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03130 FAR1 1.4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03130 - - tpra:123913749 529.25