Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03119 ATGCATGCAAGAGTGCAGCCAGGCGGCCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATAGTGTCCAGAACAGTACTTCTTCATTTCCTTCTCACAGTAAGGGGAGGAAAAGGGAAAGGGTAGATCAAGGCTCTGAGCCTGTCAAGCGAGAACGTTCAACAAAAATTGAAGATGGAGATTCTGGTAATTTTAGGTATGATAACATTTTGAAGACAGAAATTTCTAAAATTACTGAAAAGGGAGGGCTTGTTGATACTCAAGGAGTTGAGAAATTAGTACAGCTGATGGTTCCTGATAGAACTGGGAAGAAGATAGATTTAGCTAGCCGGTCATCGCTTGCAGCTGTTATTGCAGCAACAGATAAATTTGATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTACTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGGTTGGTGATGGTATTGGGTCCAGGGATGGTGATAAATCTGTTGAGGAATTTCTCTTGGTGTTACTTCGGGCACTTGATAAGCTTCCAGTGAATCTTCAGGCTCTACAGATGTGCAACATCGGTAAATCTGTGAATCATCTGCGAACCCATAAAAACACTGAAATTCAGAGGAAAGCAAGAGGTTTAGTGGACACATGGAAGAAACGGGTTGAAGCTGAAATGAATATAAATGATGCAAAATCTGGTTCTGGTCCCACTGTTGCCTGGCCTGCCAAGTCACGTCTTCCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGGGTCATCTGATGCTGCCATGAAGAGTTCAGTTACACAACTTTCTGCATCCAAAATTGCCTCTGTTAAGATTGTCCAGGGAGATAATGCTACTAGATCAGCATCAACATCTGCATTTCCAGGGCCTGCAAAGTCAGTGCCCTCACCTCGTGTTGCTGCTGTCAGTGGCGGTTCTGATAATCTTATGGCAAATGCTAGGGATGAGAAAAGTAGTAGTTCTAGTCATTCTCACAACAATAGTCAATCTTGTTCTAGTGACCATGCTAAAATCGGGGGCCTTTCAGGAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGGTATCAGGAGGCTCTTCAAGACATCGGAAATCTATTAATGGATTCTCAGGTTCAGCTCTATCTGGAGGGCAAAGGGAAACAGGATCAAGTAGGAATTCGTCCTTGCACAAAAAATTAACTTCAGAGAAAATATCTCAGTCTGGATTAATGGATAAAACAGTTGATGAAACTTCTCTTGAGGGGAATACACCCAAGCTGATTGTTAAAATTCCCAACCAGGGTAGAAGTCTCGTACAAAGGGCCAGTGCTGGTTCTCTTGATGATCCTACAATCAAGAATAGTCGAGCCTCTTCTCCTGTCCTTTCAGAAAAGCATGATCAGTTTGATCACGTCTCAAATGAAAAGAGTGACTTATATCGAGCCAATATTGGCTCAGATATTAAAAATGTATTGACTGGCTCTGATGAGGGTGATGGATCGCCTGCTGCAGTTACTGATGAAGAGCGCTGTAGGACAGGTGATGATTGTAAGAAACCATTAGAAGTATCAAAGGCTGCTTCCTCATCATCTGGAAATGAAAACAAAGCTGGGAATTTGCAGGATGCTTCTTACAGCTCCATAAATGCTTTAATAGAAGGTGTTAAGTACTCTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGAAGAGATCTTGAAGTCTAACTTGATAACTCCAGCTAGATTTCCAGAGAGAAACACTACTGCTATTGAACAGTTGTGCACAGGGAATGGTGTAGTCAAGTCCTCTGAAGAAAATCTTGTCCGGGGTGAATGTCAATCAAATAATGGTCTTGATTCTGAACAAAAGAATCAGGGTTCTATGTCAGGTGATTTAGGGATGAATGATGATAATAATTCTGATTCTCGGCCATCTGTAGGGAACGCTGCAAGAGAGCTAAATGAGCAAATTAATGCATGCAGTATGGATTTGCAACATGTTACTGAGGCTAACTTAGAAAGCAAAGGAAAATTAAATGAAAAACCTATTTCTACTCCATTTGGTGGTCTTCCTGAAAGCAGCACTGTGCAAGAAGCTAGAGATGGTGACTGTAGTGAGCAGCTCAAGGAGGAGGCTGTCAGGGGAGTGAATGCTGGTGAAATTCTTGATGTTAAGGTTAGTGGTGTTGTGGGAGTGGTGGAAGAAATTGAAAAGTTGCCATGTTCTGCGGAAGTGAATGTAAAGGGTGATAACTGTACTACTGAAGGATCAAGCGGGGGTGGACAGACAGCTCAGAAGCCTTCTGCCATTCTTATGCAATCTGATTCAGCAAGAGGAACAGATGAGAATGTACTCCATTCTTGTGTTGATAAGGTTTCTGAAGATGCCAATGAACGGGAATATGAAAAAACTCATGATATGGCTACTGAGAATCATGCTAGTCAGTCTAAAAAACAAAAAAATGAGTGTGAAAGCAATGCCTTGATGATGCCTGAGAATAAAGGTTTATGTTCCAGTGCGACTGGTTTTGCTGCTGAACATGTGGGGGAGAATTCAGAAATGAAAGAGGTTCATGACCAAGATGTTGGAGTGATACTTAACAAAGCTTCATCTAGCTTTCGTTCACAAGAAATGGACAAGCATCTGGATTCTAAAGGATCAAAATTGACTGCCATGGAAGTGGAAGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTCCTTCCATGTCTGCTGCTGCTGCTTTATCAGATGCGGATGCAAAGATTGAATTTGATTTAAATGAAGGGTTTAATGCAGATGATGGAAAATGTGGTGAGTTCAACAGCATTACCACTTCTGGATGTGCGCCTGCTGTTCAATTGATTAGTCCTGTGCCATTTCCTGCTCCATCTATGTCTTGTGGTATTCCTGCCTCAATCACTGTGGCTGCTGCTGCAAAGGGGCCCTTTGTACCACCTGAAGATTTATTGAGAAGTAAAGGTGAACTTGGTTGGAAGGGATCAGCGGCCACTAGTGCATTCCGGCCAGCTGAGCCCAGGAAAGTTCTGGAAATGCCTCTTGGTACACAAACTACCCCTATTCCTGATGCTGCAGCTGGAAAGCAGAGTCGACCACCATTGGATATTGACTTAAATGTGCCTGATGAAAGAATCCTTGATGATGTTTCTTCTCAAATTTGTGCTCGTCAGACAGATGTTGTATCTCTTGCAGCCGATGGTCATGAGCCAGTATGCAGTAAGACGGCTTCACCTGTTCGGTGCTCTGGAGGGCTTGGTCTTGACTTGAACCAAGTGGATGAAGCTTCTGATGTGGGTAATTGCTCCATGAGTAGTAGTCATAAAATAGATGTACCACTTATGCAGGTGAAATCATCATTGAGTGGTCCTCCAAGCAGAGACATGAGTGTCCACAGGGACTTTGATTTGAATAATGGACCTTCAGCTGATGAAGTTACCACTGAACCATCTTTGTTCTCTCAGCATGCCAGGATCAGTGTGCCATCTCAACCACCTGTTTTTGGACTTAGGATGAGTACTGCAGAGCCAGGGAACTCCTCTTCATGGCTTCCTTCTAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCTATTGTTGCCCCTAATGGGCCACAAAGATTGTTGACTCCTGCCACTGGTGGCAACCCATTTGGATCTGATATTTATAGGGGGCCAGTATTGTCATATCCATCTGCTCCATTCGAATATCCTGTCTTCCCTTTTAATTCCAGCTTTCCCCTTCCATCAGCATCATTTTCTGCTGGACCAACTACTTATGTATATTCAACGCCAGGTAGTCGGCTTTGCTTCCCTGCAGTGAATTCACAGTTAATGGGGCCTGCCGGCACAGTTTCATCCCATTACCCTAGGCCTTATGTTGTTGGCCTTCCAGATGGTAGCAATAGTAGTAGTAGTGCTGAGACCAGTAGGAAATGGGCTAGGCAGGGTTTAGATCTTAATGCTGGACCTGGAGGTTCAGACATAGAGGGGAGAGATGAGAGCTCATCTCTTCCATCAAGGCAACTTTCTGTTGCCTGTTCACAGGCCATAGCTGAGGAGCATGCAAGGATTCAGCTGGCTGGTAGTGTTCATAAGAGGAAGGAGCCTGATAGTGGCTGGGATGGCTACAAGCAATCCTCATGGCAATAG 4257 0.4388 MHARVQPGGRSPKPMSSPTSTSQLKSVSDSVQNSTSSFPSHSKGRKRERVDQGSEPVKRERSTKIEDGDSGNFRYDNILKTEISKITEKGGLVDTQGVEKLVQLMVPDRTGKKIDLASRSSLAAVIAATDKFDCLSQFVQLRGLPVLDEWLQEVHKGKVGDGIGSRDGDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRTHKNTEIQRKARGLVDTWKKRVEAEMNINDAKSGSGPTVAWPAKSRLPDVGQGGNRHSGGSSDAAMKSSVTQLSASKIASVKIVQGDNATRSASTSAFPGPAKSVPSPRVAAVSGGSDNLMANARDEKSSSSSHSHNNSQSCSSDHAKIGGLSGKEDARSSTAMSANKVSGGSSRHRKSINGFSGSALSGGQRETGSSRNSSLHKKLTSEKISQSGLMDKTVDETSLEGNTPKLIVKIPNQGRSLVQRASAGSLDDPTIKNSRASSPVLSEKHDQFDHVSNEKSDLYRANIGSDIKNVLTGSDEGDGSPAAVTDEERCRTGDDCKKPLEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDVGMNLLASVAAEEILKSNLITPARFPERNTTAIEQLCTGNGVVKSSEENLVRGECQSNNGLDSEQKNQGSMSGDLGMNDDNNSDSRPSVGNAARELNEQINACSMDLQHVTEANLESKGKLNEKPISTPFGGLPESSTVQEARDGDCSEQLKEEAVRGVNAGEILDVKVSGVVGVVEEIEKLPCSAEVNVKGDNCTTEGSSGGGQTAQKPSAILMQSDSARGTDENVLHSCVDKVSEDANEREYEKTHDMATENHASQSKKQKNECESNALMMPENKGLCSSATGFAAEHVGENSEMKEVHDQDVGVILNKASSSFRSQEMDKHLDSKGSKLTAMEVEEAEECTSTTADAPSMSAAAALSDADAKIEFDLNEGFNADDGKCGEFNSITTSGCAPAVQLISPVPFPAPSMSCGIPASITVAAAAKGPFVPPEDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGTQTTPIPDAAAGKQSRPPLDIDLNVPDERILDDVSSQICARQTDVVSLAADGHEPVCSKTASPVRCSGGLGLDLNQVDEASDVGNCSMSSSHKIDVPLMQVKSSLSGPPSRDMSVHRDFDLNNGPSADEVTTEPSLFSQHARISVPSQPPVFGLRMSTAEPGNSSSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPATGGNPFGSDIYRGPVLSYPSAPFEYPVFPFNSSFPLPSASFSAGPTTYVYSTPGSRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLPDGSNSSSSAETSRKWARQGLDLNAGPGGSDIEGRDESSSLPSRQLSVACSQAIAEEHARIQLAGSVHKRKEPDSGWDGYKQSSWQ. 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03119 1418 MobiDBLite consensus disorder prediction 12 40 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 235 274 - -
Seca4g03119 1418 SMART TFS2_5 151 230 IPR003617 GO:0005634
Seca4g03119 1418 MobiDBLite consensus disorder prediction 1352 1378 - -
Seca4g03119 1418 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 242 IPR035441 -
Seca4g03119 1418 CDD TFIIS_I 153 229 - -
Seca4g03119 1418 ProSiteProfiles TFIIS N-terminal domain profile. 145 231 IPR017923 -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 454 486 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 503 530 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 811 837 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 364 431 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 293 431 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 629 665 - -
Seca4g03119 1418 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 98 232 IPR035441 -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 516 530 - -
Seca4g03119 1418 Pfam TFIIS helical bundle-like domain 179 228 IPR017923 -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 811 840 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 1 71 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 293 307 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 329 353 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 1396 1418 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 41 71 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 460 475 - -
Seca4g03119 1418 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1418 - -
Seca4g03119 1418 MobiDBLite consensus disorder prediction 691 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03119 Seca-Chr4 53483713 53487999 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca4g03119 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03119 - - ccaj:109810746 2130.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03119 4 53483713 53487999 Seca4g03119 4 53483713 53487999 ECH