Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03117 ATGAGTCTAAAATCCATCTGGGCATTTTTCATAGTCATCTTTTTGCTTTTTCTAAGTGCCAATTCAGAGGAAGAAGAGGTGAGGAAGTCTCTAGTCACGTTCATGAAAAAACTTGCACCAGGGAATGGACAGAGAGATTCTGCCATGTGGGGTTGGAACCTTACATCAGATCCCTGCATTGGTAACTGGCATGGTGTGACCTGCTATTCAGGTAACCAATTCGTTAAGAGTATAATTCTTGAGGGTTTCAATTTCAGCGGGGTTGTAGAGGCTAGTTCCCTTTGCATGGCAAAGTCTCTTCAAATCCTTAGCCTGAGGAACAACAATTTACATGGTTTGATATCAGAGGATATAGGAAATTGCAAGCTCTTAACTCACTTGCTTTTAAGTGGGAATAAATTCTCTGGAGACCTTCCTATTGCAATTGCTGAACTAAGGAACATGAAGAGGCTTCATGTTTCAGAGAATTACTTCACTGGAGAGCTTCCTAATATGATTCATATTTCAAGCTTGATATCATTTCTTGCTGAAAACAACAACTTCACTGGGGAGATTCCTGATTTTGACTTCTCCAACCTTGAAGCGTTTAATGTCTCCAACAACAATTTAACGGGCCTTGTTCCTGATGTCAGAGGCAGATTCCATGCTGATAGTTTTTCTGGTAATCCTAATTTATGTGGAAAACCACTTTCAAAGGCATGTCCACCTCCAAATATAAGAAAAGACAAAAAATCATTCCTTGATGACTTGCCCATTTATTCAGGTTACATAATTCTTGGTTTTATTGTCCTTCTTTTCTTGATCTTCAAATTGTTAAGTAAATTCAAGACTAAAGAAAAAGCATTAGATGTTGAGGATAAGAGGGAAATGGGACAAGAAACTAGTGGTGGTGACAAGGCTAGTGAAGCTTCCATTTCCATTGGATCAAAGAATTGGTTGAATGGCATTGGGATTAGATCAGAGTATTCATTGACCTCTGGGGAAAGTGTGATGACTACATCAGGTCTTGTTCTTGTTTCAAGTAGAAGACTCAGGGGATTGCAATTTGAGGAGTTGCTGAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGTCTCTACAAGGTTATGCTTGACAATGGGGTGCAGTTGGCAGTCAAGAGGATCAAGGATTGGGGAATCTCAAAGCAAGATTTTCAGAGGAGGATGAACCTGATAACTCAAGTGAAACATCCAAGGGTAATGCCACCTGTTGCATACTATTGCTCCCAGCAAGAGAAGCTCCTGGCTTATGAATATCTGCAGAATGGTAGCCTCTTCATGTTACTCTATGGATCTCAAAATGGCAACTCTTTAGATTGGGGGAGCAGACTAAATGTTGCTGCTAAGGTATCTGAGGCTTTAGCATATATGCATGAGGAGCTTCGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGTAACATTTTATTTGACAAAAATATGGATCCATGCATAAGTGAATATGGCCTCATGGTGGCTGAAAACCAAGTTCAATATGTCATTTCTCACAACAAAAGCCCCAAAAACAGGAATCTGAATGCAGCCATCTTTAAAGCTGATGTATATGCCTTTGGTGTGATGCTTCTTGAGCTGCTGACAGGGAAAGTAGTTAAAAATGATGGATTTGATCTGGTTAAATGGGTGAATTCAGTAGTGAGAGAGGAATGGACTGTGGAAGTTTTTGACAAGTCTCTAATCTCTCAAGGTGCTTCTGAAGAGAGGATGGTGAATTTGTTGCAGGTAGCATTAAAATGCATAAATCCTTCTCCAAAGAATAGGCCAAGTATGAGTCAAGTTGCAGAGATGACAAATGCATTGAAAGAGGAAGAAGAAAAATCCATATCCTTTGACACATGA 1887 0.3985 MSLKSIWAFFIVIFLLFLSANSEEEEVRKSLVTFMKKLAPGNGQRDSAMWGWNLTSDPCIGNWHGVTCYSGNQFVKSIILEGFNFSGVVEASSLCMAKSLQILSLRNNNLHGLISEDIGNCKLLTHLLLSGNKFSGDLPIAIAELRNMKRLHVSENYFTGELPNMIHISSLISFLAENNNFTGEIPDFDFSNLEAFNVSNNNLTGLVPDVRGRFHADSFSGNPNLCGKPLSKACPPPNIRKDKKSFLDDLPIYSGYIILGFIVLLFLIFKLLSKFKTKEKALDVEDKREMGQETSGGDKASEASISIGSKNWLNGIGIRSEYSLTSGESVMTTSGLVLVSSRRLRGLQFEELLSAPAELIRRGKHGSLYKVMLDNGVQLAVKRIKDWGISKQDFQRRMNLITQVKHPRVMPPVAYYCSQQEKLLAYEYLQNGSLFMLLYGSQNGNSLDWGSRLNVAAKVSEALAYMHEELRESGIAHGNLKSSNILFDKNMDPCISEYGLMVAENQVQYVISHNKSPKNRNLNAAIFKADVYAFGVMLLELLTGKVVKNDGFDLVKWVNSVVREEWTVEVFDKSLISQGASEERMVNLLQVALKCINPSPKNRPSMSQVAEMTNALKEEEEKSISFDT. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03117 628 SUPERFAMILY Protein kinase-like (PK-like) 358 612 IPR011009 -
Seca4g03117 628 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Seca4g03117 628 Gene3D Ribonuclease Inhibitor 189 237 IPR032675 -
Seca4g03117 628 PANTHER OS05G0588300 PROTEIN 9 618 - -
Seca4g03117 628 ProSiteProfiles Protein kinase domain profile. 354 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03117 628 Gene3D Transferase(Phosphotransferase) domain 1 429 627 - -
Seca4g03117 628 SUPERFAMILY L domain-like 54 230 - -
Seca4g03117 628 Pfam Protein kinase domain 360 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03117 628 Gene3D Phosphorylase Kinase; domain 1 332 428 - -
Seca4g03117 628 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03117 Seca-Chr4 53441143 53443457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03117 52 617 Receptor kinase-like Gene Family AT1G48480 34.046 7.29e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g03117 Pkinase 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03117 - - gmx:100787974 928.702