Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03114 ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCTGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGAGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTAGAAATCTAAGAAAAATATTGCAAGACTATTTTTCATTCACCTAA 387 0.4393 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVCLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGSGEGRAPIGRKKPATRNLRKILQDYFSFT. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03114 128 Gene3D - 1 62 IPR014722 -
Seca4g03114 128 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca4g03114 128 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca4g03114 128 Gene3D Ribosomal protein L2, domain 3 63 123 IPR014726 -
Seca4g03114 128 PANTHER RIBOSOMAL PROTEIN L2 1 120 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca4g03114 128 SUPERFAMILY Translation proteins SH3-like domain 1 113 IPR008991 -
Seca4g03114 128 Pfam Ribosomal Proteins L2, C-terminal domain 1 114 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca4g03114 128 MobiDBLite consensus disorder prediction 92 111 - -
Seca4g03114 128 FunFam 50S ribosomal protein L2 62 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03114 Seca-Chr4 53413444 53413830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03114 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.643 3.76e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03114 K02886 - fve:10251609 217.624