Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03110 ATGGTGGCAAGATCATACATCAATTTGTTGGACTTGGTGTCAGGGGATATTTTAAATTTCCCTCAAACTCCAAGAGCTCTTCCGCGAGCCATGACTGTTCCAGGAGTTATGTCTGATTTAGATGGTAAACAAAGCAATGATGATGATTCAAATACTGTCTCATCAGAACAGCGCCGCAAGATGATTATAGTAGCAAATTTTCTTCCTCTCAATGCTAAAAAGGATGACATATCTGGCAGATGGTGCTTTAGTTATGATGAAGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTGCTGATACAGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGACAAAGTTTCTGTTCAGTTGCTGGAGGAATTCAATTGCTTGCCTACTTTTATTCCTTCAGACATCCAGGAACTGTTCTATAATGGATTCTGCAAGCAATATTTGTGGCCTCTATTCCATTACATGCTGCCCATGTATCCAGGCTATTGCAATCGCTTTGATAGGTCACTGTGGCAGGCTTATGTGTCTGCTAACAAGATATTTGCAGATAGAGTCATGGAGGTCATTAATCCAGAAGATGATTTTGTATGGGTGCATGATTATCATCTCATGGTTCTTCCAACATTTTTGCGGAAGAGGTATAGTCGTGTCAAACTAGGCTTTTTCCTCCACAGTCCATTTCCTTCTTCAGAAATTTATCGAACTCTACCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATACAGATTTAATTGGCTTTCACACATTTGATTATGCTCGGCATTTTCTGTCCTGCTGCAGTCGAATGCTTGGCTTGGAGTATGAATCAAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCTGGGATTCATATGGGTCGCATTCAGTCTGCCTTAAATCACCCTTCTACTTCTACCATAATTAGAGAAATCTATGATCAGTATGAGGGGAAAAAACTTATCATTGGTGTTGATGATATGGACATATTCAAAGGTGTAAGTTTAAAGTTCTTTGCTATAGAACAACTCCTGCAGCAATGTCCACAATTACAGGGTGAATTGGTGCTGGTCCAAATTTTAAATCCCCCAATGAGTAGTGGCAAAGAAGTCGAGGAAGCAAAGGAGGAGGCCTACATCACTGCTAAAAGGATAAACGAAAGGTTTGGTTTTCCAGGTTATGAACCTGTGGTCATCATTGATCGTCATGTTTCTTTCTATGAGAAGACAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTATGAATTTGGTTCCATACAAATATATTGTCTGCAGACAGGGGAGTTCTAATATTGATGAAGCCTTAGATATTGCTTCTGATTCCCCTCGTACAAGTGCGCTTGTTGTTTCTGAGTTTATAGGTTGTTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGATATTAATGCTGTAGCTGAAGCACTAAAGTTGGCTATCTCAATGCACAATAGAGAGAAACAGTTCCGGCATGAGAAGCACTACCGATATGTTAGTTCTCATGATGTGGCTTACTGGGCCCAACGTTTTGAACAAGATCTTGAGTTCTCATGCAGGGATCACTATAGGAAACGTTGCTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAATTTCAGGAAGCTATCCATAGACCACATTGCCTCTGCATATAAAAGGACAACTTCCAGAGCAATCTTTTTGGATTATGATGGTACAATTGTACCTCAAACTTCCATTGTTAAATCCCCCAGTCCTGAAGTCACGTCCGTGCTAAATAATCTCTGCAGTGATCTTAACAACACTGTGTTTATTGTTAGCGGCAGGGGGAAAACTTCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATGAGGTGGGGGAAACAATCAAGTTGGAAAATGAGTCATATAAGCACAAATTTTGCATGGAAAAGCATTGCGGAACCAGTCATGAGATCATATACTGAGGCGACAGATGGCTCCTATATAGAGACCAAAGAAAGTGCCTTGGTATGGCATTATTACAATGCCGACCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAGCACATTGTTGAAGTCATGCTTCAGGGGGTTACTAAAGGGTCAGTTGCACAGGAAGTTCTGTCTACACTAACCAGTAATGGCAAATCGCCAGATTTTGTGCTGTGCATTGGGGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAACCAAACCTTATAGTGCAACTTCCTCTTCAGCACCAGAAATCTTTGCATGTACTGTTGGACAGAAACCAAGCAAAGCTAGATACTACCTAGATGATACTGTGGACGTGATGATGTTACTTGAGGGTCTTGTTACCGCGTCAGGGTCTAAATCAAAAGGTTCTACAGATGCCCCTTCTGAAAAAACAGAATTCTGTTTTGAAAATATTGCTTGA 2601 0.4091 MVARSYINLLDLVSGDILNFPQTPRALPRAMTVPGVMSDLDGKQSNDDDSNTVSSEQRRKMIIVANFLPLNAKKDDISGRWCFSYDEDSIFWQLKDGLSADTDVVYVGSLKVDVDASEQDKVSVQLLEEFNCLPTFIPSDIQELFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWQAYVSANKIFADRVMEVINPEDDFVWVHDYHLMVLPTFLRKRYSRVKLGFFLHSPFPSSEIYRTLPVRGEILKALLNTDLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYFGRTIFIKILPAGIHMGRIQSALNHPSTSTIIREIYDQYEGKKLIIGVDDMDIFKGVSLKFFAIEQLLQQCPQLQGELVLVQILNPPMSSGKEVEEAKEEAYITAKRINERFGFPGYEPVVIIDRHVSFYEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSSNIDEALDIASDSPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVAEALKLAISMHNREKQFRHEKHYRYVSSHDVAYWAQRFEQDLEFSCRDHYRKRCWGIGFGLNFRILSLSPNFRKLSIDHIASAYKRTTSRAIFLDYDGTIVPQTSIVKSPSPEVTSVLNNLCSDLNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFMRWGKQSSWKMSHISTNFAWKSIAEPVMRSYTEATDGSYIETKESALVWHYYNADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIVEVMLQGVTKGSVAQEVLSTLTSNGKSPDFVLCIGDDRSDEDMFESILTKPYSATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLEGLVTASGSKSKGSTDAPSEKTEFCFENIA. 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03110 866 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Seca4g03110 866 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Seca4g03110 866 Gene3D Glycogen Phosphorylase B; 51 312 - -
Seca4g03110 866 Gene3D - 594 826 IPR023214 -
Seca4g03110 866 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Seca4g03110 866 NCBIfam trehalose-phosphatase 592 840 IPR003337 GO:0003824|GO:0005992
Seca4g03110 866 Gene3D Glycogen Phosphorylase B; 313 529 - -
Seca4g03110 866 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Seca4g03110 866 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Seca4g03110 866 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Seca4g03110 866 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 840 IPR001830 GO:0003824|GO:0005992
Seca4g03110 866 SUPERFAMILY HAD-like 592 840 IPR036412 -
Seca4g03110 866 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 545 - -
Seca4g03110 866 CDD HAD_TPP 593 834 - -
Seca4g03110 866 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Seca4g03110 866 Gene3D - 674 754 - -
Seca4g03110 866 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 852 - -
Seca4g03110 866 NCBIfam HAD-IIB family hydrolase 593 794 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03110 Seca-Chr4 53378199 53383413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03110 1 865 Trehalose Biosynthesis Gene Families AT1G23870 66.744 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03110 K16055 - gmx:100812031 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03732 12 95786373 95792323 Seca4g03110 4 53378199 53383413 ECH
Seca4g03110 4 53378199 53383413 Seca4g03110 4 53378199 53383413 ECH
Seca12g01515 12 15414701 15418021 Seca4g03110 4 53378199 53383413 PCT