Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03101 ATGGCTTTACGCAGATTTTTCTCGTTGGGTTCTCGCTCTCTATCTTCACCCCGGCCTCCCCCTGGTTTTGCTTCTCTGTTTCAGACATTAGGCACTCAAAGGGGGAGGTTGAGCACTGCCGCAGAAGTTGATGAATTAATCACACCACCTGTCGAAGTAAGATACACGAAGCTTCTAATAAATGGGGGATTTGTGGATGCTGCATCAGGAAAAACTTTTCCTGCTTATGACCCTCGAACTGGGGAAGTGATAGCTTATGTTGCTGAAGGTGACCAAGAGGATATCAATCGTGCAGTATCTGCAGCTCGAAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACCCCTTATGAAAGATCAAGGATACTATTGCGTGTTGCTGATTTGGTTGAGAAACACATTGATGAGCTTGCAGCACTAGAAACATGGAATAATGGCAAGCCTTATGAACAGGCTGCAAACATTGAATTACCTATGGTAGTTCGTATGCTTCACTACTATGCTGGTTGGGCAGACAAAATTCATGGCCTAACAGTTCCAGCTGATGGGAATTATCATGTACAAATATTGCATGAACCAATTGGGGTTGCAGGGCAAATCATACCTTGGAATTTTCCTTTATTGTTGTTTACTTGGAAAGTTGGACCTGCACTAGCATGTGGTAATACTGTTGTAGTAAAGACTTCCGAGCAAACACCTTTGACTGGTTTATTTGCAGCACAGTTATTTCATGAGGCTGGTCTTCCCCCAGGGGTTCTAAATGTTGTGTCTGGTTTTGGTCCAACTGCTGGTTCTGCTCTTGCTAGTCATATGGATGTGGACAAGCTAGCTTTCACTGGATCAACTAACACTGGAAAAATTATATACCAATTAGCTGCAAAAAGCAATCTTAAGCCTGTGACATTGGAACTGGGAGGAAAATCACCTTTCATAGTGTGTGAGGATGCTGATGTTAACAAGGCTGTAGAACTTGCACACTTTGCTCTGTTCTTTAATCAGGGTCAATGTTGTTGTGCCGGATCACGTACTTATGTGCATGAACGAATATATGATGAGTTTTTGGAGAAAGCCAAGGCAGCTGCTTTGAGACGTGTTGTTGGTGATCCATTTAAGAAAGGTGTAGAACAAGGTCCTCAGATTGATTCAGAACAATTTGAGAAAATCCTGCGCTACATCAGGTCAGGTGTTGAATGCAATGCTAAGCTGGAATGTGGCGGAGAAAGAATTGGCACAAAAGGCTTCTTTGTCCAACCAACAGTCTTCTCAGATGTTGAGGATGACATGCTGATAGCAAAAGATGAGATCTTTGGCCCAGTTCAAACCATACTGAAATTCAAGGATATTGGTGAAGTTATAAGAAGAGCAAATGCAACACGCTATGGTCTTGCCGCTGGCGTGTTCACGAAGAATTTGGACACAGCTAATACGTTAATGCGGGGACTGAAGGCTGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCAGCAATTCCATTTGGTGGGTACAAGATGAGTGGGGTAGGGAGGGAGAAGGGTATCTACAGTCTTCATAACTACTTGCAGGTTAAGGCTGTTGTTACACCTCTCAAGAATCCCGCATGGTTGTAG 1611 0.4351 MALRRFFSLGSRSLSSPRPPPGFASLFQTLGTQRGRLSTAAEVDELITPPVEVRYTKLLINGGFVDAASGKTFPAYDPRTGEVIAYVAEGDQEDINRAVSAARKAFDEGPWPKMTPYERSRILLRVADLVEKHIDELAALETWNNGKPYEQAANIELPMVVRMLHYYAGWADKIHGLTVPADGNYHVQILHEPIGVAGQIIPWNFPLLLFTWKVGPALACGNTVVVKTSEQTPLTGLFAAQLFHEAGLPPGVLNVVSGFGPTAGSALASHMDVDKLAFTGSTNTGKIIYQLAAKSNLKPVTLELGGKSPFIVCEDADVNKAVELAHFALFFNQGQCCCAGSRTYVHERIYDEFLEKAKAAALRRVVGDPFKKGVEQGPQIDSEQFEKILRYIRSGVECNAKLECGGERIGTKGFFVQPTVFSDVEDDMLIAKDEIFGPVQTILKFKDIGEVIRRANATRYGLAAGVFTKNLDTANTLMRGLKAGTVWINCFDVFDAAIPFGGYKMSGVGREKGIYSLHNYLQVKAVVTPLKNPAWL. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03101 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
Seca4g03101 536 SUPERFAMILY ALDH-like 51 530 IPR016161 GO:0016491
Seca4g03101 536 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 60 332 - -
Seca4g03101 536 Pfam Aldehyde dehydrogenase family 64 526 IPR015590 GO:0016491
Seca4g03101 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 526 IPR016162 GO:0016491
Seca4g03101 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 497 IPR016163 GO:0016620
Seca4g03101 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 526 - -
Seca4g03101 536 FunFam Mitochondrial aldehyde dehydrogenase 2 308 497 - -
Seca4g03101 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Seca4g03101 536 FunFam Aldehyde dehydrogenase, putative 498 524 - -
Seca4g03101 536 CDD ALDH_F2BC 53 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03101 Seca-Chr4 53203007 53207795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03101 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 74.217 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03101 K00128 - tcc:18603880 905.59