Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03097 ATGGGTGGTGGTTTGCAGGTTCTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCCGTTGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAGATGCTGGGATGCTAATCCTGATAAACGGCCTGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAGGGTGGAGGTATGATCCCTGATGATCAGCAGCAAGGTTGTCTTTGCTTTCGTAAGCACAGAGGGCCTTGA 360 0.45 MGGGLQVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPDDQQQGCLCFRKHRGP. 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03097 119 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 96 - -
Seca4g03097 119 Pfam Protein tyrosine and serine/threonine kinase 7 90 IPR001245 GO:0004672|GO:0006468
Seca4g03097 119 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03097 119 SUPERFAMILY Protein kinase-like (PK-like) 7 90 IPR011009 -
Seca4g03097 119 Gene3D Transferase(Phosphotransferase) domain 1 5 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03097 Seca-Chr4 53159521 53159999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03097 6 119 MAP Kinase Kinase Kinase AT4G14780 74.561 1.25e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g03097 PK_Tyr_Ser-Thr 1.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03097 - - cit:102614632 245.358