Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03096 ATGAAGGAAAGCAATGATGGGTTCGTGAGGGCTGATCAGATTGATCTAAAGAGCATAGATGAACAGCTTGAGAGGCACCTGAACAAGGCATTGACTATGGATAAGATGAAGCAGAAAGATGAGGATGGTTCTGATGATCATGCTCGTCACTCAACTTCTATTGCCACTTCCATTAAATTCAAAAATGTTGCAGCAACTGTTGGTGGACCTGCTGCTGCTATCTTCAAGAAGCAAAGAGAAGACTGGGAAATTGACCCTTCCAATCTTATCATCAAGAGTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGTGTCTATGATGGCCAAGATGTTGCTGTCAAAATGCTGGACTGGGGTGAAGAAGGGCACCGGACAGAAGCTGAAATTGCTGCCCTCAGGTCAGCTTTTACACAAGAAGTTGTTGTTTGGCATAAACTTGAACATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGATCTTCAGAATTACAGATACAAACTGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTGCGCTGAAATCTTACTTAATAAAGAATAGGAGGAGGAAGTTAGCTTTCAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAAATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGAGTTGCACGTGTTGAAGCCTCAAATCCCAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGGTGTGTAGCCAGTTCCCCTAA 858 0.4359 MKESNDGFVRADQIDLKSIDEQLERHLNKALTMDKMKQKDEDGSDDHARHSTSIATSIKFKNVAATVGGPAAAIFKKQREDWEIDPSNLIIKSVIARGTFGTVHRGVYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVVVWHKLEHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVCSQFP. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03096 285 Pfam Protein tyrosine and serine/threonine kinase 91 282 IPR001245 GO:0004672|GO:0006468
Seca4g03096 285 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Seca4g03096 285 SMART serkin_6 89 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03096 285 FunFam Kinase suppressor of Ras 1 78 173 - -
Seca4g03096 285 ProSiteProfiles Protein kinase domain profile. 89 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03096 285 Gene3D Transferase(Phosphotransferase) domain 1 179 285 - -
Seca4g03096 285 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 63 281 - -
Seca4g03096 285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Seca4g03096 285 SUPERFAMILY Protein kinase-like (PK-like) 77 284 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03096 Seca-Chr4 53154461 53159210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03096 1 285 MAP Kinase Kinase Kinase AT5G50000 74.737 3.55e-159 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g03096 PK_Tyr_Ser-Thr 9.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03096 - - gmx:100809898 485.723