Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03095 ATGACGAAAACAAGCACCACCTGCAGCAATGATTCCTCCAAACTCGATCGCAAAACCATTGAAAGAAACCGCAGAGTTCACATGAAAACTCTCTGCCACCAGCTTTCTTCTCTTATCCCTTCCAACCATAAACCATCCAAATCCAAGAAGTACATGGTAGCGCAGCAAGACCAGCTGGATCTGGCAGCGAGGTATATAAAGCATATGAGAGAAAGAATAGATAAATTAAAGAGGCAGAAGGAGGAAGCCGTAAGGTCAAACCAAACCGATAATAAAATGTTCAATATTGAGTCAAAATTGCCAGTACTTGAACTAAGAGACTTAGGTTCTAGCATACAAGTTATGTTGGTGAGTGGGTTGAACAACAAGACCTTCATGTTATACGAAGTAATTAGTGTCCTTGAGGAAGAAGGCGCTGAAGTTGTCAATGCAAGCTTCTCAACCGTCGGGGATAAAATTTTTTACACTGTTCATGCTCAGGTTAAAATATCAAGACTGGGTGTAGAAACGGCGAGAGTATATGAGAGGCTTCAGGAGTTTATTGCCCCACTTGAAAGCTGCTGGGAGGACGTTTGA 576 0.4219 MTKTSTTCSNDSSKLDRKTIERNRRVHMKTLCHQLSSLIPSNHKPSKSKKYMVAQQDQLDLAARYIKHMRERIDKLKRQKEEAVRSNQTDNKMFNIESKLPVLELRDLGSSIQVMLVSGLNNKTFMLYEVISVLEEEGAEVVNASFSTVGDKIFYTVHAQVKISRLGVETARVYERLQEFIAPLESCWEDV. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03095 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 88 IPR036638 GO:0046983
Seca4g03095 191 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g03095 191 Pfam Helix-loop-helix DNA-binding domain 17 69 IPR011598 GO:0046983
Seca4g03095 191 Coils Coil 59 86 - -
Seca4g03095 191 Gene3D - 5 96 IPR036638 GO:0046983
Seca4g03095 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 179 - -
Seca4g03095 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 69 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03095 Seca-Chr4 53090413 53091707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03095 5 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.031 1.18e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03095 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03095 - - gmx:100790403 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01530 12 16052723 16054844 Seca4g03095 4 53090413 53091707 ECH
Seca4g03095 4 53090413 53091707 Seca4g03095 4 53090413 53091707 ECH
Seca12g01530 12 16052723 16054844 Seca4g03095 4 53090413 53091707 PCT