Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03088 ATGGCCGTCAGAGGCGTCAATTTCAAGTGGTACGATGGCTTTTTCTTGTCCATGCTCGCCACCAGCTTAGTTATTGTGGCGATTAATTGGAAGAGGTACCATTCTTGTGCATACCCCTTGCACATTTGGATTGTGGTTGACTACACTACTGTTTTTACTTTCCGGCTTTTGATGTTTGTCGATAACTGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAACAGAGATATGGCCGTTTCTGTGGAAGAGTAGTTGTACTTTCAATCCTTGCATTGATTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTATGGTTCAGAAATGCTAAAATCTGCTTGCCTGGACAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCTGCGGCGAAGTGGTTGACACGAAGACAAGCACACTTGTCAGGTGCCCAACAGGGTATCCCTGTATCCGGATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGACACAGGCCAAGATGCTGCTCCGTATCTTCCTGGAATTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCCAAGTTCAGTTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCTCATCTGCTTGGAAGAGTTCCATGTAGAGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATAAGTGGCTTCGGCTGAATGTGAAATGTCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTCTTGTCAATATCCATTCTGAGTCTGAACAGTCTTCTGCTAGTATTGCAGCAACAACCAGATAG 924 0.4545 MAVRGVNFKWYDGFFLSMLATSLVIVAINWKRYHSCAYPLHIWIVVDYTTVFTFRLLMFVDNWLASGMGLDFGWQQRYGRFCGRVVVLSILALILYPFLWAWTIIGTLWFRNAKICLPGQGQKWGFLIWLLFSYCGLLCIACMSAAKWLTRRQAHLSGAQQGIPVSGYGVLVEMIRVPDWAFEAAGQETRDTGQDAAPYLPGIYLTPAQREAVEALIQELPKFSLKAVPTDCSECLICLEEFHVENEVRGLPCAHNFHVECIDKWLRLNVKCPRCRCSVFPNLDLSALVNIHSESEQSSASIAATTR. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03088 307 Pfam Ring finger domain 234 276 IPR001841 -
Seca4g03088 307 SUPERFAMILY RING/U-box 216 283 - -
Seca4g03088 307 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Seca4g03088 307 SMART ring_2 235 275 IPR001841 -
Seca4g03088 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 281 IPR013083 -
Seca4g03088 307 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Seca4g03088 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 306 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03088 Seca-Chr4 52997730 53003198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03088 58 306 C3H Transcription Factor Family AT3G47990 75.100 3.09e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03088 K16284 - cave:132175810 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03088 4 52997730 53003198 Seca4g03088 4 52997730 53003198 ECH
Seca12g01533 12 16116483 16119502 Seca4g03088 4 52997730 53003198 PCT