LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g03081	ATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAACTGCTAAGCTTAGTGGAAAAGGGGGGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGAGGTACACGAAGAACTTGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTACTGGTAATAATAACGCACAAGATGGCTCCACTACGTTTCGTTCAGCCACTTTCGGAAATGAAGAAGAAATACCTGCTACGGGAATGAAGCTCGTGAGGAAGCCAACAATGGCGGATTGA	297	0.4377	MALGIIRPYQKVWLQLLSLVEKGGVVIHVKAGVYKESVDIKRYTKNLMIIGDGMGSTIVTGNNNAQDGSTTFRSATFGNEEEIPATGMKLVRKPTMAD.	99

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g03081	98	Gene3D	-	17	91	IPR012334	-
	Seca4g03081	98	SUPERFAMILY	Pectin lyase-like	24	78	IPR011050	-
	Seca4g03081	98	PANTHER	PECTINESTERASE	24	79	-	-
	Seca4g03081	98	Pfam	Pectinesterase	22	80	IPR000070	GO:0030599\|GO:0042545

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g03081	Seca-Chr4	52897603	52897899	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g03081	25	78	Carbohydrate Esterase	AT1G23200	70.370	8.27e-21	83.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g03081	-		K01051	gmx:100816802	99.3673

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