Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03081 ATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAACTGCTAAGCTTAGTGGAAAAGGGGGGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGAGGTACACGAAGAACTTGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTACTGGTAATAATAACGCACAAGATGGCTCCACTACGTTTCGTTCAGCCACTTTCGGAAATGAAGAAGAAATACCTGCTACGGGAATGAAGCTCGTGAGGAAGCCAACAATGGCGGATTGA 297 0.4377 MALGIIRPYQKVWLQLLSLVEKGGVVIHVKAGVYKESVDIKRYTKNLMIIGDGMGSTIVTGNNNAQDGSTTFRSATFGNEEEIPATGMKLVRKPTMAD. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03081 98 Gene3D - 17 91 IPR012334 -
Seca4g03081 98 SUPERFAMILY Pectin lyase-like 24 78 IPR011050 -
Seca4g03081 98 PANTHER PECTINESTERASE 24 79 - -
Seca4g03081 98 Pfam Pectinesterase 22 80 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03081 Seca-Chr4 52897603 52897899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03081 25 78 Carbohydrate Esterase AT1G23200 70.370 8.27e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03081 - K01051 gmx:100816802 99.3673