Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03069 ATGGGTTTATCTTCTCTGCACGTCTGCATGGAATCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCACCATCTGGGGACATGCTCACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGTCCAAGGTGTGATTCAACCCACACCAAGTTCTGCTACTACAACAATTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTAAAGGAGGGACTCTTAGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAACAAGAAAGTTTCAGCCAAGAAATCCAATGACCATTTACCTAATAATCAAAACCAACCACAACCTGGAGGACCTTCCTACCATCATCACAACCCCAAAGATCTTCAACTCTCTTTCCCAGATGTTCAATTTTCTCACCTCAGTAACTTTCTTGGGACTAATGCTGGGGCATTAGGAAACCCTAATTTCATGGACAACAAGTATAATAACAACAACATTGGTATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTAGTGATCATATGGGTATGGCTGTTGGGTTGGGAGATATGAATGGTCAAAATGGGTTGCCACCAAATTTTCACAATCTTTGTTCTCCTGCATTTGGTGCCATGTCCTTTGATGGTGGAAACAATAATGGAGGTTACTTAATGGACTCTTGCCAGAGACTGATGCTGCCATATGATCATGCCAATGAGGATCACAATGCCTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCAGGAAAAGAGTCATTTGGATATCTTAACGGTCCAGGATCATGGAATGGCATGATGAACGGTTATGGATCTTCCACAACAAACCCTTTGGTCTAA 999 0.4324 MGLSSLHVCMESSDHWLQGTIHEESGMDSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHLPNNQNQPQPGGPSYHHHNPKDLQLSFPDVQFSHLSNFLGTNAGALGNPNFMDNKYNNNNIGMLENPRPIDFMESKLEGIIGSSSRNFDFFGNSSDHMGMAVGLGDMNGQNGLPPNFHNLCSPAFGAMSFDGGNNNGGYLMDSCQRLMLPYDHANEDHNASIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGPGSWNGMMNGYGSSTTNPLV. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03069 332 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Seca4g03069 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 195 IPR045174 GO:0003700|GO:0006355
Seca4g03069 332 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Seca4g03069 332 MobiDBLite consensus disorder prediction 117 132 - -
Seca4g03069 332 MobiDBLite consensus disorder prediction 101 142 - -
Seca4g03069 332 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03069 Seca-Chr4 52629965 52631818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03069 1 332 C2C2-Dof Transcription Factor Family AT5G62940 43.005 2.01e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g03069 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03069 - - gmx:778107 533.872