Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03064 ATGGAATTTGAGTCTATTAAAAAGGCGAGGGAGTTTTATATATCTTTTGCTAAAAAAAGGGGTTTTGGAGTACGTATTCGTTCAACTAAACCAAAGAGAGCAGTTTTGGTATGTTGCAATGAAGGTCAACACCAAGTGAAAAGCGCTGGATATGAAACTAAAAGAAAATGTTCAACCACCCGAAGTGGTTGTCAAGCTTCACTTATTGTTTCAAGAGGCACAACACAAAGTAGTTGGTTTATACAATCTTTTAACAATGATCATAACCATGTCATGGTTAGCCCCAGGAGCGTGTCTTATATGAGGTGTCATAAAAAGATGACCATTGCTGCAAAAAATCTTGTTGAAAGATTTGAGGAAGAAGGCTTGCCGACAGGAAAGGTTGCTAAAATTTTCAATGATGTTTTTGAGGAAAAATGGAAGCACTTAATGATTGAGTATAACTTGGAGGATAATGAATGGCTTCGGGGGCTATATAAGATTAGAGAATCATGGGTGCCAATTTATAATAGAAGTACATTCTTTGCCGGCATGAATACTACTCAAAGAAGCGAGAGTATTAATGCATTTTTTTATTCTTTTGTAGATGCATCAACAACATTACAAGAATTTGTGTTAAATTTTGAGAAAGCAATTGGTAACCGCTTGGATGATGAAAGAAAGGAAGATTATGAATCTAGGCATAAATCGCGTATTTTGAGTACAGGATCCAAGAAGATTGACAGAGATGGGCCTAAATATGTCTATCAGGTGTCTAGTTGTTATGATGCTCAAGATACATTTGTTGTTGATATAAATTTAGACTTAAAGATTGCTAAATGTGGCTGCCAATTATATGAATTTATGGGGATATTGTGCAGGCACATATTAGTAATTTTTCAAGCAAAGGGTGTTGTTCAGATTCCCAGTCATTTCATTTTGCAACGTTGGACTAAGGATGCTAACAAAGGTATCAAGGTCAATTATACTGAAGATAATCTTGATGGTCAATCTAATACATCAAGGATTATAAGAAGGATGCATGCACAACAAGAAGCAAGCATGTTAGTTGATCTTGCTGAGGAGTCTGAGGAGTTGTACAAGTTCATTATCTCAGAACTGAGTCACACTTGTAAGTTAGCTATAGCAATGAAAACAAATTCACTCATTGGTGATGAGATAACTCTTTTGGATTCAAGCCAAAATTTGAACAATACTTGCATATCTGAGCAAGGGAACGAACCCACACAATTGCCTATTGGTCATGCCCAATAA 1254 0.3596 MEFESIKKAREFYISFAKKRGFGVRIRSTKPKRAVLVCCNEGQHQVKSAGYETKRKCSTTRSGCQASLIVSRGTTQSSWFIQSFNNDHNHVMVSPRSVSYMRCHKKMTIAAKNLVERFEEEGLPTGKVAKIFNDVFEEKWKHLMIEYNLEDNEWLRGLYKIRESWVPIYNRSTFFAGMNTTQRSESINAFFYSFVDASTTLQEFVLNFEKAIGNRLDDERKEDYESRHKSRILSTGSKKIDRDGPKYVYQVSSCYDAQDTFVVDINLDLKIAKCGCQLYEFMGILCRHILVIFQAKGVVQIPSHFILQRWTKDANKGIKVNYTEDNLDGQSNTSRIIRRMHAQQEASMLVDLAEESEELYKFIISELSHTCKLAIAMKTNSLIGDEITLLDSSQNLNNTCISEQGNEPTQLPIGHAQ. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03064 417 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 110 IPR031052 GO:0006355
Seca4g03064 417 Pfam FAR1 DNA-binding domain 11 93 IPR004330 -
Seca4g03064 417 SMART 26again6 272 299 IPR006564 GO:0008270
Seca4g03064 417 Pfam SWIM zinc finger 262 296 IPR007527 GO:0008270
Seca4g03064 417 ProSiteProfiles Zinc finger SWIM-type profile. 261 297 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03064 Seca-Chr4 52559668 52561619 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03064 FAR1 4.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03064 - - mtr:112420114 379.407