Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03057 ATGCAGAGCGCGGCTTTCACCCTCTCTCCTTCCCTCCCTCTCCGCAATCTCAACCGCCACCCTTCCACGACTCCTTCCCTTAGCATCCGTCTCTCCGCCAAACACAACGAAGGCGTAAACTCCAATGGCGCTTCCTCTTCCTTCATTCGCCGTTCCTGGTCCCTCGGACCTTCCTCTTCTTTCAAGTTCAGACCCCTCCCTCTCCTTTCTTCATCCTCTGATCCCTCCCCGCCTAGAGCCGCTTCCGTCCCTGACAGCGCCGGTTCCGCTGAATCCGGCTCCCTATTCAAAACTCTCGAGCTTGGAGCCTTGTTTGGTCTCTGGTACCTTTTCAATATCTACTTCAACATCTACAACAAACAGGTCTTGAAGGCGTTTCATTTCCCTGTAACTGTGACTGCTGTTCAATTTGCTGTTGGGTCTGTCCTTGTATCATTCATGTGGGGCTTTAATCTCTACAAGAGGCCGAAAATCAGTGGTGCACAGCTTGCAGCGATATTGCCACTGGCTATTGTACATACTTTGGGGAACCTTTTCACGAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCACACGATCAAAGCCATGGAGCCTTTCTTTTCCGTGATCCTTTCTGCCATGTTCCTTGGAGAGATGCCTACACCATGGGTGGTTGGTTCTCTTCTGCCCATCGTTGGTGGAGTTGCACTGGCATCTGCTACTGAGGCCTCTTTCAATTGGGCTGGTTTTTGGAGTGCAATGGCTTCTAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGTCATGGTTAAGAAAGAGGACTCTATGGACAACATAACTCTTTTCTCTATAATAACAGTAATGTCCTTCTTCTTGTTAGCACCTGTGGCTGTCTTCATGGAGGGCGTCAAATTTACCCCGGCTTACCTGCAATCTGCTGGGCTAAATGTTAGACAAGTGTACATCAGATCTCTTCTTGCTGCACTCTGTTTTCATGCATACCAGCAAGTTTCTTATATGATATTGCAGAGGGTATCACCTGTTACCCACTCTGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTTAGCTCGGTCATCTTCTTCCAAACACCTGTCTCTCCTGTGAATGCTTTCGAAACCAAGCCTATGAATTTTGTTGTACCAGATGAAGTCTCATGCATAACACCAGTGAATCATTCCAAAAGAGTTGGCATGAACAAAAACAATAGGACATATACAACCACTAGAAGGACACACAAAGTTCGTAAGAAGTCCAACATAGTCAAGGGACAATGGACAGTAGAAGAAGATGGGTTGCTGATTCAACTGGTAGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAGATATTGCCAGGAAGAATAGGAAAACAGTGCAGAGAGCGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATTGAAGCTCATGCAGAGATAGGAAACAAATGGGCAGAGATTGCTAAAAGATTGCCAGGAAGAACTGAGAACTCAATAAAAAATCATTGGAATGCAACTAAGAGAAGGCAATATTCCAAAAGAAAGTGCCGCTCCAAATACCCAAGAGGCACACTTCTACAGGAATATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAATAGACTATAGGAGAAAATCTTCTGCTAATGCTAACAATGCCATGAAAAACAAAGCTACCACAAGCAAATTAGCAGTACCAATAGCTCAGCCACAGATTGGTGATCAATTTTGTCCCAGTGATTGCTTTGTGCCAAATTGTGATTTTAATGGGGTCTCTGACTTTTGCTTTGGTGAGAATTTGTTTGAAGAAGGATGTAGTATTGATTCTCTGCTAGATGTTGTTAATCTTGATGACAATCATGTTGAGACAGAGATGCCACTTGGGATTATGGCATCCATGCTGGGGGTTGAAGTTAAGAAGGAGCTGGATTTGGTGGAGATGGTCAATGGAATAGTTAAATAA 2016 0.4439 MQSAAFTLSPSLPLRNLNRHPSTTPSLSIRLSAKHNEGVNSNGASSSFIRRSWSLGPSSSFKFRPLPLLSSSSDPSPPRAASVPDSAGSAESGSLFKTLELGALFGLWYLFNIYFNIYNKQVLKAFHFPVTVTAVQFAVGSVLVSFMWGFNLYKRPKISGAQLAAILPLAIVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEMPTPWVVGSLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITVMSFFLLAPVAVFMEGVKFTPAYLQSAGLNVRQVYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFETKPMNFVVPDEVSCITPVNHSKRVGMNKNNRTYTTTRRTHKVRKKSNIVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQILPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRKSSANANNAMKNKATTSKLAVPIAQPQIGDQFCPSDCFVPNCDFNGVSDFCFGENLFEEGCSIDSLLDVVNLDDNHVETEMPLGIMASMLGVEVKKELDLVEMVNGIVK. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03057 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 478 528 IPR017930 -
Seca4g03057 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 422 477 IPR017930 -
Seca4g03057 671 CDD SANT 482 524 IPR001005 -
Seca4g03057 671 Gene3D - 481 542 - -
Seca4g03057 671 CDD SANT 430 473 IPR001005 -
Seca4g03057 671 ProSiteProfiles Myb-like domain profile. 422 473 IPR001005 -
Seca4g03057 671 FunFam Transcription factor MYB119 480 544 - -
Seca4g03057 671 Gene3D - 426 479 - -
Seca4g03057 671 PANTHER SOLUTE CARRIER FAMILY 35 100 446 - -
Seca4g03057 671 FunFam Transcriptional activator Myb isoform A 426 479 - -
Seca4g03057 671 Pfam Triose-phosphate Transporter family 100 376 IPR004853 -
Seca4g03057 671 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 99 376 IPR004696 GO:0016020|GO:0022857|GO:0055085
Seca4g03057 671 ProSiteProfiles Myb-like domain profile. 474 524 IPR001005 -
Seca4g03057 671 SUPERFAMILY Homeodomain-like 424 520 IPR009057 -
Seca4g03057 671 SMART sant 426 475 IPR001005 -
Seca4g03057 671 SMART sant 478 526 IPR001005 -
Seca4g03057 671 Pfam Myb-like DNA-binding domain 482 521 IPR001005 -
Seca4g03057 671 Pfam Myb-like DNA-binding domain 427 473 IPR001005 -
Seca4g03057 671 MobiDBLite consensus disorder prediction 70 90 - -
Seca4g03057 671 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03057 Seca-Chr4 52456730 52467890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03057 1 378 Antiporters AT5G33320 69.949 1.95e-173 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g03057 TPT 4.7e-117 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03057 K15283 - gmx:100804563 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01560 12 16503859 16507736 Seca4g03057 4 52456730 52467890 ECH
Seca4g03057 4 52456730 52467890 Seca4g03057 4 52456730 52467890 ECH
Seca12g01560 12 16503859 16507736 Seca4g03057 4 52456730 52467890 PCT