Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03043 ATGGATGAGGAGCTGTATGGCTTCCACTATTTCTCAGAACAGTCATCAATGGCTCCGCCACCGCCGCCATCAGCACCGATCACTCACAACGTGACTTCATCGATTAAAACATTAGTCCGGTCCAGACCGGAACAGTTCATCCGGTCCGGTTCTTCTTCTGCATCCGATGCAGTGTCCTCTAATTATAAGGCTGTTTTGCAGCAACAGGAGGAGGAGGAGGATTCTCAATCTCAAGTACTTCGCGCTAAAGTAGCTTCTCATCCTCTTTTCCCTCAGCTTCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCGCCGCCAGAGATGGCGCAAGTATTAGATGGAATCAGATTGAGAGGAGAGGGAGAGCAGAATAGTGGTATGTGTCAGATATCTTCCTTGTTCGCTGCTGATCCCGAGCTCGACGATTTCATGGAAATGTATTGCAATTTATTGGTGAAGTACAAATCGGATCTTTCAAGGCCTTTTGACGAGGCAATCGCGTTCATCAACGACATGGAAACGCAGCTCAACTCCATCTGTAACGGTCCTGCTGCAGTCAGAAGCAACGCTCCTCAAACTGGTCTCGCTCTCTCTTTCTCTCTCTTGGAAATGACCGGAACATCTGAAAAGGATTTTATGAGGGAGGAGAAAGAGTGCAAGAGGATAACTGAAGTTCAAGAGCTGAAGGACAATCTTCAACGTAGATATAGTGGCTACATTAGTAATCTGAAGCATGAATTTTCCAAAAATAAAAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACTTACATGGTGGAATATTCACCTTAAATGGCCATACCCAAAGGATGCGGATAAGGTTGCCCTAGCTGAATGGACTGGCCTGGATCAGAAGCAGGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACGAACGAAATGCAAGCTGCAGTTTTAGATGGTCTCTATGGACCTCTGTACGAATGA 990 0.4545 MDEELYGFHYFSEQSSMAPPPPPSAPITHNVTSSIKTLVRSRPEQFIRSGSSSASDAVSSNYKAVLQQQEEEEDSQSQVLRAKVASHPLFPQLLHAYIDCHKVGAPPEMAQVLDGIRLRGEGEQNSGMCQISSLFAADPELDDFMEMYCNLLVKYKSDLSRPFDEAIAFINDMETQLNSICNGPAAVRSNAPQTGLALSFSLLEMTGTSEKDFMREEKECKRITEVQELKDNLQRRYSGYISNLKHEFSKNKKKEKLPKEAKQILLTWWNIHLKWPYPKDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTNEMQAAVLDGLYGPLYE. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03043 329 Pfam Homeobox KN domain 268 307 IPR008422 GO:0003677|GO:0006355
Seca4g03043 329 SMART HOX_1 250 315 IPR001356 GO:0003677
Seca4g03043 329 MobiDBLite consensus disorder prediction 44 77 - -
Seca4g03043 329 ProSiteProfiles ELK domain profile. 228 248 IPR005539 GO:0003677
Seca4g03043 329 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 316 - -
Seca4g03043 329 SMART KNOX2_2 131 182 IPR005541 GO:0003677|GO:0005634
Seca4g03043 329 SUPERFAMILY Homeodomain-like 250 321 IPR009057 -
Seca4g03043 329 ProSiteProfiles 'Homeobox' domain profile. 248 311 IPR001356 GO:0003677
Seca4g03043 329 ProSitePatterns 'Homeobox' domain signature. 286 309 IPR017970 GO:0000981|GO:0006355
Seca4g03043 329 MobiDBLite consensus disorder prediction 44 66 - -
Seca4g03043 329 SMART ELK_2 228 249 IPR005539 GO:0003677
Seca4g03043 329 Gene3D - 245 319 - -
Seca4g03043 329 Pfam ELK domain 228 249 IPR005539 GO:0003677
Seca4g03043 329 CDD homeodomain 263 311 IPR001356 GO:0003677
Seca4g03043 329 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Seca4g03043 329 Pfam KNOX2 domain 137 181 IPR005541 GO:0003677|GO:0005634
Seca4g03043 329 Pfam KNOX1 domain 80 116 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03043 Seca-Chr4 52168837 52174534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03043 52 328 Homeobox Transcription Factor Family AT1G23380 48.571 6.12e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca4g03043 KNOX2 5.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03043 - - ccaj:109811765 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03043 4 52168837 52174534 Seca4g03043 4 52168837 52174534 ECH