Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03037 ATGACTGCATATTTGATAAATTTGAATGCTGCACTAGTGGTGATGGACTTCATTTTGCAACTGGTTCTTACAGGAAAAAAATGTGCTTGCTTTAGGCGGTGGGTAGAAGACTTCATCGCCTCCAGCTTCGATCTGGTCATGCATGTTGAGAAGGAAAACAAGACCTTGGGATTTGAAAAGCTTCATGAGATAGCAGTTGGGACTGCCAGAGGCATTGCTTACTTGCATGAAGAGTTTCAACAAAGAATAATCCACTATGACATTAAACCAGGAAATATTCTCTTGGACAGCAACTTGTGTCCTAAAGTTGTTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGAAAATACTCATATAACTATGACTGGAGGCAGGGGAACTCCTGGTTATGCTGCACTTGAACTTTGGATGCCATTTCCTGTAACTTTCAAGTGTGATGTTTATAGTTTTGGTATACTGTTATTTGAAATCATAGGTAGGAGAAGAAACCATGATATTAACCTTTCAGAAAGCCAAGAGTGGTTTCCAAGGTTGGTTTGGAATAGATTTGATGTTGACCAGGTGGGGGAATTGATAACAACTTGTGGGATAGAGGAACAATATGAGGAGATAGCAGAGAGAATGGTTAAGGTAGCTCTATCATGTGTTCATTGTAAACCAAAATCAAGACCTGAGATGAGTGTTGTGGTGAAAATGCTGGAAGGTTCAGTAGAAATTCCCAAGCCTATGAACCCTTTTTAG 741 0.4008 MTAYLINLNAALVVMDFILQLVLTGKKCACFRRWVEDFIASSFDLVMHVEKENKTLGFEKLHEIAVGTARGIAYLHEEFQQRIIHYDIKPGNILLDSNLCPKVVDFGLAKLCNRENTHITMTGGRGTPGYAALELWMPFPVTFKCDVYSFGILLFEIIGRRRNHDINLSESQEWFPRLVWNRFDVDQVGELITTCGIEEQYEEIAERMVKVALSCVHCKPKSRPEMSVVVKMLEGSVEIPKPMNPF. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03037 246 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03037 246 PANTHER RUST RESISTANCE KINASE LR10-RELATED 51 241 IPR045874 GO:0004672
Seca4g03037 246 SUPERFAMILY Protein kinase-like (PK-like) 43 240 IPR011009 -
Seca4g03037 246 Gene3D Transferase(Phosphotransferase) domain 1 42 241 - -
Seca4g03037 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Seca4g03037 246 FunFam Os07g0541700 protein 38 127 - -
Seca4g03037 246 Pfam Protein tyrosine and serine/threonine kinase 44 233 IPR001245 GO:0004672|GO:0006468
Seca4g03037 246 SMART serkin_6 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03037 Seca-Chr4 52092844 52095604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03037 58 246 Receptor kinase-like Gene Family AT5G38280 41.538 4.05e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03037 PK_Tyr_Ser-Thr 4.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03037 - - gmx:100305451 334.724