Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03033 ATGGCTCTTTTCTTCTGTTTAAAGCAACTGTGTGTTTGGCAAAAACGATTTCAGAATGCTGAAAGGCCAATCACTAGATCAGAATCACCATTTCTGACAGTGACTATGGATAAATTTCTGAATGATATTGATATGGAAAGGGAGAAGCCAATCAGATTTACTGATCAGCAGCTAAGGATTGCAACCGACAACTACTTTTACAAGTTGGGATCAGGAGGTTTTGGAGCAGTTTATAAAGGTAGTTTTAGTAATGGAACCATGATAGCTGTCAAGGTTCCGCATGGGAATTCTGACAAAATAATTAATCAGCAGTTTATGGCCGAAGTGGGAACAATGGGAAAAATTCATCATTTCAATATGGTTCGGCTCTTTGGATTTTGCTTTGAAAGAAACTTGATAACACTGGTTTATGAATACATAGGGAATGGCTATCTTGATAAGTATCTGTTCCAGGAAAACAAGACCTTGCGATTTGAAAAGCTTCATGAGATTGCAGTTGGGACTGCCAGAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGAATAA 552 0.3822 MALFFCLKQLCVWQKRFQNAERPITRSESPFLTVTMDKFLNDIDMEREKPIRFTDQQLRIATDNYFYKLGSGGFGAVYKGSFSNGTMIAVKVPHGNSDKIINQQFMAEVGTMGKIHHFNMVRLFGFCFERNLITLVYEYIGNGYLDKYLFQENKTLRFEKLHEIAVGTAREALLTCMKSVNKE. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03033 183 Gene3D Phosphorylase Kinase; domain 1 36 139 - -
Seca4g03033 183 PANTHER OS07G0415500 PROTEIN 5 170 - -
Seca4g03033 183 Pfam Protein tyrosine and serine/threonine kinase 68 170 IPR001245 GO:0004672|GO:0006468
Seca4g03033 183 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Seca4g03033 183 ProSiteProfiles Protein kinase domain profile. 63 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03033 183 SUPERFAMILY Protein kinase-like (PK-like) 53 170 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03033 Seca-Chr4 51975601 51976152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03033 44 170 Receptor kinase-like Gene Family AT1G29740 40.000 3.48e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03033 PK_Tyr_Ser-Thr 1.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03033 - - gmx:100803355 233.802