Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03031 ATGCAAACTCAAGGACGAAATCCATGGAGAATAATCCTACGCTCCACCTTTGAGTTGAATCTTGAGAGAAAGATGAGAGAAAATGAGAGAAAATTTGAGTATCCTGCCATGTTCCCACATGAACATGGCAGAGAGCAATTTCTAATTTCTGTAGCTTCTGGCAGTGTAGTGTCCTCACATGAAAATAGCCTGTTCCCACACAAGTCTGGCAGAAACAACTTTTGTCCTAAAGTTGCAGATTTTGGTTTGGCCAAGCTTTGCAATAGGGATAATACTCACATAACCATGACTGCATATAGGGGCACTCTTGGTTATGCTGCACCTGAACTTTATATGCCCCTGTATGTAACTCACAAGTGTGATGTTTATAGCTTTGGTATATTGTTGTTTGAAATCATAGGTAGGAGAAGAAACCATGACATTAACCTTTCAGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTGGCATAGATTTGATGCTGAACAGGTGAGGGAGTTGATAATGGATTGTGGTATAGAGGAGCAATATAAGGAGATAACAGAGAGAATGGTTAAGGTAGCTCTGTCGTGTGTTCAGTATAAACCAGAATCAAGACCTGAGATGAGTATTGTGGTGAAAATGTTGGAAGGTTCAGTGGAATTCCCAAGCCTTTGA 654 0.4067 MQTQGRNPWRIILRSTFELNLERKMRENERKFEYPAMFPHEHGREQFLISVASGSVVSSHENSLFPHKSGRNNFCPKVADFGLAKLCNRDNTHITMTAYRGTLGYAAPELYMPLYVTHKCDVYSFGILLFEIIGRRRNHDINLSESQEWFPMWVWHRFDAEQVRELIMDCGIEEQYKEITERMVKVALSCVQYKPESRPEMSIVVKMLEGSVEFPSL. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03031 217 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03031 217 SMART tyrkin_6 19 208 IPR020635 GO:0004713|GO:0006468
Seca4g03031 217 SUPERFAMILY Protein kinase-like (PK-like) 72 211 IPR011009 -
Seca4g03031 217 PANTHER RUST RESISTANCE KINASE LR10-RELATED 72 213 IPR045874 GO:0004672
Seca4g03031 217 Gene3D Transferase(Phosphotransferase) domain 1 59 214 - -
Seca4g03031 217 Pfam Protein tyrosine and serine/threonine kinase 75 208 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03031 Seca-Chr4 51973759 51974854 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03031 72 213 Receptor kinase-like Gene Family AT1G66980 43.243 3.71e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03031 PK_Tyr_Ser-Thr 2.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03031 - - gmx:100305451 246.514