Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03030 ATGATTGGAGGTGGCATTAATGATGCTCCTGCATTAGCTGCAGCTGACATTGGCATCTCAATTGGAATATCAGGTTTAGCTCTTGCTAATGAGACAGGCAATGCAATTCTCATGTCAAATGACATCACAAAAATACCTGAAGCCATTCAGCTAGCAAGAAAAACTACAAGAAAGCTCAGTGAGAATGTCACTATTTCAATTGGCTCCAAGAGTGCCATACTGGTTTTGGAAATTACGGGATATCAATTAGTTTGGCTTGCTGTGCTAACTAATGTTGGAACCTGTTTACTTGTGATTCTCAATATATAG 309 0.3916 MIGGGINDAPALAAADIGISIGISGLALANETGNAILMSNDITKIPEAIQLARKTTRKLSENVTISIGSKSAILVLEITGYQLVWLAVLTNVGTCLLVILNI. 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03030 102 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 101 - -
Seca4g03030 102 Gene3D - 1 70 IPR023214 -
Seca4g03030 102 SUPERFAMILY HAD-like 1 102 IPR036412 -
Seca4g03030 102 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Seca4g03030 102 PRINTS P-type cation-transporting ATPase superfamily signature 26 38 - -
Seca4g03030 102 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g03030 102 PRINTS H+-transporting ATPase (proton pump) signature 34 59 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03030 Seca-Chr4 51967895 51968203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03030 1 101 Primary Pumps ATPases AT4G30110 67.327 5.04e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03030 K01534 - gmx:100815324 146.362