Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03029 ATGAGGTTATTGGAAACATGGGGAAGTATAGAAAGGCAACACCTAGCTGCAGTTACTACAATGAAAGAGTGTTTGCATTCTGCTGTTTGGAAAGTTCCCCTTTTAGAAGGTGCAAAGGTGGATATACAATTAGCATCCATTGCTCAGAGGCATGCATCTGATCTAACAGCTTCCATCAAAGAGAAGCCAATCAGGTTTACTGGTCAGAAGCTAAGGATTGCAACTGATAACTACTCCTACAAGTTGGGGTCAGGAGGTTTTGGAGCAGTTTATAAAGGAAATTTTAGTGATGGAACCATGATAGCTGTCAAGGTTCTGCATGGGAATTCTGACAAGATAATTAATCAGCAGTTTATGGCAGAAGTTGGAACCATTGGAAAAATTCATCATTTGAATCTAGTTAGGCTCTATGGACTTTGCTTTGAAAAAAACTTGATAACATTGGTTTATGAATACATGGGGAATGGTTCACTTGATAAGTATCTGTTCCAGGAAAACAAGACCTTGGGATTTGAAAAGCTTCATGAGATAGAAGTTGGGACCGCCAGAGGCATTGCTTACTTGCATGGAGAGTGTCAACAAAGAATAATCCACTATGACATTAAACCAGGAAACATTCTCTTGGACAATAACTTGTGTCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAAGGAAAATACTCATGTAACTATGACTAGAGGCAGGGGAACTCCTGGTTATGCTGCACCTGAACTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGTATGTTGTTGTTTGAAATCACAGGTAGGAGGAAAAACCATGATATGAACCTTTCAGAAAGCCAAGAGTTGTTTCCAATGTGGGTTTGGAATAGATTTGATGCTGAACGGGTGGGGGAGTTGATAACAGCTTGTGGGATAGAGGAGAAAAATGAGGAGATAACAGAGAGAATGGTTAAGAGCGTTTCAATCTTCCCCCTTAAAGAAAATTCGTCCTCGAATTTGAAACTAATACTAACCTTAAGATTCGAACAATTGGGGATACTTTTCACGCATGATAGATTCAGTTCCCAAGTCGTCTCTTCACCCGATGGGCCTCGCCATAAAACCTTGACAGAAACAATATCCTTTGAACGCAAACGCCTCACCTGTTTATCAACTATAGCCACTGGTTGCTCTGATGCCCGGGAACATCCACATCATGGCGGGGCTGGCTCTCCAAGCGGGGATTTTTTCCATCCACAAGACTCGAACCCAAGACCTTGCTTAAGGGGAATCAAGCATGTACCACTTGAACCAACCCCCGTTGAAAGCCAAGAGTGGTTTGCAAGGTTGGTTTGGAATAGATTTGATGCTGAGCGGGTGGGGGAATTGATAACAACTTGTGGGATAGAGGAACAATACGAGCAGATAGGAGAGAGAATGGTTAAGGTAGCTCTGTCATGTGTTCATTATAAACCAGAATTAAGATCTGAGATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTAGAAATTCCCAAGCTTTGA 1539 0.4159 MRLLETWGSIERQHLAAVTTMKECLHSAVWKVPLLEGAKVDIQLASIAQRHASDLTASIKEKPIRFTGQKLRIATDNYSYKLGSGGFGAVYKGNFSDGTMIAVKVLHGNSDKIINQQFMAEVGTIGKIHHLNLVRLYGLCFEKNLITLVYEYMGNGSLDKYLFQENKTLGFEKLHEIEVGTARGIAYLHGECQQRIIHYDIKPGNILLDNNLCPKVADFGLAKLCNKENTHVTMTRGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEITGRRKNHDMNLSESQELFPMWVWNRFDAERVGELITACGIEEKNEEITERMVKSVSIFPLKENSSSNLKLILTLRFEQLGILFTHDRFSSQVVSSPDGPRHKTLTETISFERKRLTCLSTIATGCSDAREHPHHGGAGSPSGDFFHPQDSNPRPCLRGIKHVPLEPTPVESQEWFARLVWNRFDAERVGELITTCGIEEQYEQIGERMVKVALSCVHYKPELRSEMSVVVKMLEGSLEIPKL. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03029 512 PANTHER OS07G0415500 PROTEIN 53 510 - -
Seca4g03029 512 Pfam QWRF family 1 62 IPR007573 -
Seca4g03029 512 FunFam Os07g0541700 protein 153 240 - -
Seca4g03029 512 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Seca4g03029 512 SUPERFAMILY Protein kinase-like (PK-like) 60 504 IPR011009 -
Seca4g03029 512 Gene3D Phosphorylase Kinase; domain 1 48 152 - -
Seca4g03029 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca4g03029 512 ProSiteProfiles Protein kinase domain profile. 76 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03029 512 Gene3D Transferase(Phosphotransferase) domain 1 153 329 - -
Seca4g03029 512 Pfam Protein tyrosine and serine/threonine kinase 80 277 IPR001245 GO:0004672|GO:0006468
Seca4g03029 512 FunFam serine/threonine-protein kinase PBS1-like 45 152 - -
Seca4g03029 512 SMART serkin_6 76 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03029 Seca-Chr4 51956419 51965557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03029 58 322 Receptor kinase-like Gene Family AT1G56120 47.761 1.07e-63 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03029 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03029 - - gmx:100803355 450.284