Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03028 ATGCTAAGGAGTATTTGCAATAAAGTACTGCCTTATTACCTACAAGGATCTCAAAATGGTGTTAGTCCAGATACACAATTTCTGACACTGACTATGAATAAATTTCTGAATGATATGGAAAGCGAAAAGCCAATCAAATTTACTGGTCAGCAGCTAATGCTTGCAACTGACAACTACTCTTACAAGTTGGGGTCAGGGGGTTTTGGAGCAGTTTATAAAGGGAGTTTCAGTGATGGAACCATGATAGCTGTCAAGGTTCTGCTTCTGCATGAGAATTCTGACAAGATAATTAATCAGCAGTTTATGGCAGAAGTTGGTACAATTGGTAAAATTCATCATTTCAATCTGTTTGAAATCATAGGTAGGAGAAGAAACCATGATATTAACCTTTCAGAAATCCAAGAGTGGTTTCCAAGGTTGGTTTGGAATAGATTTGATGCTGAGCAGGTGGGGGAATTGATAACAACTTGTGGGATAGAGGAACAATATGAGGAGATAGCAGAGAGAATGGTTAAGGTAGCTCTGTCATGTGTTCATTATAAACCAGAATCAAGACCTGAGATGAGTGTTGTGTTGAAAATGTTGGAAGGTTCAGTGGAAATTCCCAAGCCTTTGAACCATTTTCAGCACTTTGATGCATGGGACTTTCGCTGCCCTTCCATTCCAACCATCACAGATCAATACTGA 687 0.3916 MLRSICNKVLPYYLQGSQNGVSPDTQFLTLTMNKFLNDMESEKPIKFTGQQLMLATDNYSYKLGSGGFGAVYKGSFSDGTMIAVKVLLLHENSDKIINQQFMAEVGTIGKIHHFNLFEIIGRRRNHDINLSEIQEWFPRLVWNRFDAEQVGELITTCGIEEQYEEIAERMVKVALSCVHYKPESRPEMSVVLKMLEGSVEIPKPLNHFQHFDAWDFRCPSIPTITDQY. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03028 228 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 121 - -
Seca4g03028 228 ProSiteProfiles Protein kinase domain profile. 57 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03028 228 Gene3D Phosphorylase Kinase; domain 1 31 130 - -
Seca4g03028 228 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Seca4g03028 228 Pfam Protein tyrosine and serine/threonine kinase 61 124 IPR001245 GO:0004672|GO:0006468
Seca4g03028 228 SUPERFAMILY Protein kinase-like (PK-like) 44 128 IPR011009 -
Seca4g03028 228 SMART tyrkin_6 57 195 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03028 Seca-Chr4 51948268 51949357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03028 47 121 Receptor kinase-like Gene Family AT5G56890 46.753 1.94e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03028 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03028 - - taes:123158653 188.348