Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03027 ATGGAAAGATTCCTGAGCAACATTAATAGAGAGAAACCAATCAGATTCTCACCTGAGCAACTTGAAGGAATTACAAGGAACTACTCAACCATATTGGGTTCTGGTGCTTTCGGGGTTGTCTTCAAAGGAGAATTGTCAAATGGAGAGCATGTGGCAGTCAAAGTTCTTAGCTGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTGAGCACCATTGGAAGAACATATCATATCAATCTAGTCAGACTTTATGGCTTCTGCTTCCACCATGACACAAGAGCTCTTGTTTATGAGTATGTGGAAAATGGGTCTTTGGACAAGTACTTGTTTGGAAGCCAGAACCAAGACATTGAGTTGGGGAAGCTTCATGAGATTGCAATTGGAACAGCTAAAGGAATTGCTTATTTACATGAGGAATGTCAACATAGAATAATTCATTATGATATCAAACCAGAGAATGTTCTTCTTGACATGAAATTAGAACCAAAGATAGCAGATTTTGGCCTAGCAAAGCTTCGCAGCAGAGAAAGTAACACTATGATCAATACACACTTCAGAGGAACCAGGGGATATGCTGCACCAGAAATGTGGAATGCTTATCCAGTGACTCACAAATGTGATGTGTATAGTTTTGGTATTCTTTTATTTGAAATTGTAGGGAGGAGGAGGCATTTTGATTCTAGCTACAGTGAGTCACAGCAATGGTTTCCAAAATGGACATGGGAGATGTTTGAGAATAATGAATTACCTGTAATGCTTGCACTTTGTGGAATGCAAGAGAAAGACAATGAGAAAGCTGAGAGAATGGTAAAGGTGGCTTTATGGTGTGTTCAGTATTCACCAGAAGATGTCTTATGA 864 0.3935 MERFLSNINREKPIRFSPEQLEGITRNYSTILGSGAFGVVFKGELSNGEHVAVKVLSCLDMGMEEQFKAEVSTIGRTYHINLVRLYGFCFHHDTRALVYEYVENGSLDKYLFGSQNQDIELGKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENVLLDMKLEPKIADFGLAKLRSRESNTMINTHFRGTRGYAAPEMWNAYPVTHKCDVYSFGILLFEIVGRRRHFDSSYSESQQWFPKWTWEMFENNELPVMLALCGMQEKDNEKAERMVKVALWCVQYSPEDVL. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03027 287 Gene3D Phosphorylase Kinase; domain 1 3 101 - -
Seca4g03027 287 Gene3D Transferase(Phosphotransferase) domain 1 102 286 - -
Seca4g03027 287 SMART serkin_6 26 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03027 287 ProSiteProfiles Protein kinase domain profile. 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03027 287 FunFam serine/threonine-protein kinase PBS1-like 2 101 - -
Seca4g03027 287 FunFam Protein kinase superfamily protein 102 174 - -
Seca4g03027 287 Pfam Protein kinase domain 30 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03027 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Seca4g03027 287 SUPERFAMILY Protein kinase-like (PK-like) 9 285 IPR011009 -
Seca4g03027 287 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Seca4g03027 287 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03027 Seca-Chr4 51932261 51933971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03027 15 285 Receptor kinase-like Gene Family AT5G38280 40.794 1.83e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03027 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03027 - - aprc:113852543 511.146