Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03023 ATGTCATCCTCAGGTGATGTTGCAATTGAGGTTGTCCTCGTCATGGCTGTGGTTGCGGTTAAGATAGGTATTTTGGTTTGTGTGTGCAGAAAAAGACATCAGATTGGTGATAGATCAGTTAGTCCAGACTCACAATTTCTGACACTGACTATGGATAAATTTCTCATTGACATGGAAAGGGAAAGGGCAATCAGGTTTACTGGTCTGCAGCTAAGGATTGCAACAGAAAACTACTCTAACATGGTGGGGTCAGGAGGTTTTGGAGCAGTTTATAAGGGAATTTTTAGTGATGGAACGATGCTAGTTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTGAGGAGCAATTTATGGCCGAAGTGGGTACAATTGGTAGAATTCATCATTTCAATCTAGTTCGGTTATATGGGTTTTTCTTTGAAAGAAACTTGATAGCACTGGTTTATGAATACATGGGAAATGGCTCTCTTGACAAGTATCTGTTTCAGGAAAACAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCTGTTGGGACAGCCAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGAATAATCCACTATGACATTAAACTAGGAAATATTCTCTTGGACAGGAACTTCAATTCTAAAGTTGTTGATTTTGGTTTGGCCAAGGTTTGCAACAGGGAAAATACTCACATAACTATGACTGGAGGTAGGGGAACTCCTAGTTATGCTGGCATGCTGTTATTTGAAATCATAGGTAGAAGAAGGAACCTTGACATTAAACTTCCTGAAAGCCAGGAGTGGTTTCCAATTTGGGTTTGGAAAAAGTTTGATGCTAGACAACTGGGGGAGTTAATAATTGTCTGTGGGATAGAGGAGCAAAATAAGGAGATAACAGAAAGAATGGTTAAGGTGGCTCTGTGTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAATAGAAATTCCAAAGCCTTTGAACCCATTTCAGTACTTGATGGATGGGACTCTGGCTGCTGCTGATCCAGTCCAAGTGTCACAGACCTATACAACAAGTATTTCTTCTGGCTCTTCAGTTATGGTAAGTGAATCCAACATTGTATGTGCTACTCCTATTATGAGGAAGTATGAGATTGAATTAGCCTCTAGCAATGGATGA 1191 0.4022 MSSSGDVAIEVVLVMAVVAVKIGILVCVCRKRHQIGDRSVSPDSQFLTLTMDKFLIDMERERAIRFTGLQLRIATENYSNMVGSGGFGAVYKGIFSDGTMLVVKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFFFERNLIALVYEYMGNGSLDKYLFQENKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKLGNILLDRNFNSKVVDFGLAKVCNRENTHITMTGGRGTPSYAGMLLFEIIGRRRNLDIKLPESQEWFPIWVWKKFDARQLGELIIVCGIEEQNKEITERMVKVALCCVQYRPESRPIMSVVVKMLEGSIEIPKPLNPFQYLMDGTLAAADPVQVSQTYTTSISSGSSVMVSESNIVCATPIMRKYEIELASSNG. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03023 396 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Seca4g03023 396 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 337 - -
Seca4g03023 396 Pfam Protein kinase domain 80 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03023 396 Gene3D Transferase(Phosphotransferase) domain 1 245 333 - -
Seca4g03023 396 Gene3D Transferase(Phosphotransferase) domain 1 153 244 - -
Seca4g03023 396 SMART serkin_6 76 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03023 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca4g03023 396 Gene3D Phosphorylase Kinase; domain 1 52 152 - -
Seca4g03023 396 FunFam Os07g0541700 protein 153 240 - -
Seca4g03023 396 SUPERFAMILY Protein kinase-like (PK-like) 61 328 IPR011009 -
Seca4g03023 396 ProSiteProfiles Protein kinase domain profile. 76 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03023 Seca-Chr4 51910344 51911643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03023 65 348 Receptor kinase-like Gene Family AT5G38280 36.741 1.01e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca4g03023 Pkinase 1.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03023 - - gmx:100803355 598.201