Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03011 ATGGGTATCAACATAAAGGGACAAATAGAGAAGGTGAATGGGAAGGAACTGAGTTACAGTGAATTTGTGGAAAGATATATGGAAAAGAACCAGCCGGTTGTGCTCACTGGACTAATGGACCATCATTGGAGGGCTTGCAATGACTGGGTCACCCCTCATGGACAACCCAATCTTCAATTTTTCTCAACTCATTTTGGGGCCTCTAAAGTTCAGGTTGCAGATTGTGATGCCAGAGATTTCACTGATCAAAAAAGAGAGGAGATGATGGTCTCGGATTTCATAGGATGTTGCCTTCAACAAGTTAAGGGTTCTGCAGTTCAGTGTAATAATGAAAATCATACAAGTAATGGTCACTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCAGAATATGTAGCATACACCACTCCAATGTTCTTCTGTGATGATTGGCTCAACTTTTATCTTGACAACTTCAGAATGCATACAGATTCTGACACTTACAAGCAAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTATACATGGGAGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGCGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATGTGAAAAACTGTGTATATAATATCTTTGATGAAGTCTCTGACTCAAAATATCCTGGTTTTAAAAGGGCTATCTGGTTAGAATGCACACAAGAAGCGGGTGAAATCATATTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAAGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGTACAGTATATATGCTGGCTGATTGCAATTTCCTATCACGGGTCATGAAATCTTTATATGTTGGGACAAACTAG 1071 0.394 MGINIKGQIEKVNGKELSYSEFVERYMEKNQPVVLTGLMDHHWRACNDWVTPHGQPNLQFFSTHFGASKVQVADCDARDFTDQKREEMMVSDFIGCCLQQVKGSAVQCNNENHTSNGHSVSVPYLKDWHFVKEYPEYVAYTTPMFFCDDWLNFYLDNFRMHTDSDTYKQNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLIFDRNVKNCVYNIFDEVSDSKYPGFKRAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLKDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGTVYMLADCNFLSRVMKSLYVGTN. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03011 356 ProSiteProfiles JmjC domain profile. 131 303 IPR003347 -
Seca4g03011 356 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 332 - -
Seca4g03011 356 Pfam Cupin-like domain 21 286 IPR041667 -
Seca4g03011 356 Gene3D Cupin 2 287 - -
Seca4g03011 356 SUPERFAMILY Clavaminate synthase-like 7 310 - -
Seca4g03011 356 SMART cupin_9 123 303 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03011 Seca-Chr4 51642481 51647653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03011 7 295 Glycosyltransferase AT1G78280 24.242 6.04e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca4g03011 Cupin_8 1.5e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03011 - - lja:Lj1g3v0342020.1 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03011 4 51642481 51647653 Seca4g03011 4 51642481 51647653 ECH