Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02999 ATGGCATCATCCAGTTCTTACAATTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAATGCTTGCCAGGTTGCATCTTTGCACCTTACTTCCCACCTGAAGAGCCTCAAAAATTCGCCAACGTCCACAAGATCTTCGGTGCGAGCAATGTGACAAAGCTTCTGAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCTCGAGTTAGAGACCCAGTTTATGGCTGTGTTGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAGAGGCTTCAAAAGGAACTTGATTCTGCTAATGCTGATCTCCTTCGCTATGCCTACAATGATATCTCTCCATCATCTCTTACACATGTGCCACCAGGAATCACTGCTTCAACAATTCAACCTCATACTCAGAGGCAGTTTAATGCAAGAATTGGTAATGAAGCAAGTGGTTTTTATCGCCAATCTCCAACTACTTTCTCTTTTCCTTATTCTCTTCCATGGACTGATACCTCTTCAGAGGATATCAATGAAGGAGGAGGAGGAGGTAATTTGTGA 564 0.445 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDISPSSLTHVPPGITASTIQPHTQRQFNARIGNEASGFYRQSPTTFSFPYSLPWTDTSSEDINEGGGGGNL. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02999 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 136 - -
Seca4g02999 187 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca4g02999 187 Coils Coil 89 116 - -
Seca4g02999 187 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02999 Seca-Chr4 51441649 51444005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02999 1 138 AS2 family AT5G63090 79.137 1.07e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g02999 LOB 5.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02999 - - gmx:100803667 318.546