Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02994 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAACTCTTCAATTACATAACCAGGTTTGGTGTTGGATGCTGGAGTTCAGTTCCCAAACAAGCTGGGCTCCAAAGGTGTGGAAAAAGCTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATTTGAAGAGAGGGATGTTCTCACAACAAGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAGTTGCCAGGGAGAACAGATAATGAGATAAAGAACTTCTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTCCTCAATAGTGAAACTCATATAAAGGAAGAAAAGAAGGGAATAATAAGCACAGAGACACCTTCCATGCTAATACCAATTTCTGAAGCAGGGGTTTTAGCTACATCCACAACAGGGTCAGCATTTTTAATGAGTGATTCAAATTACTATGATAATGGGGTAACTACTACTGTAACAGAAGCTTCAAGAGAAGTTTTTAACCCCTTGTCCTACTTTGAATTCCAAATTGGTGTTCCTCAAATAGGTTATAATTATAATTCTAGCCTTATTAGACAATTTGATCAGAACCAGTTCAATGGATTCATGCCATGTTCTGATAATGGGAACGTGTCGGTGGCAGAGTTTTCAGATAACAACTCAGCTTCCAAAATCAGTTGTAATTTGTTGGTGAAAAAAAGTTGTAGCAATAGCTCAACTATGAGTGTTTATCCAGCAGGGATGGAAAATGCAGTGTTCTCATGGGGTGAAGAGAACAAGATGGATCCTTTGTTAGAGTTTGAAATCAATGGTGCAAAATCTAAAGAGTTGATGAAGACAAGTTCATGGCAAGAAGAGGAGTTGCTGACACAAAATTCAATGGATTTCAGTAGCTATCCTTTAACGTCACTATCAGAAGATCTAACTGGAGCAAATTTTGATGTATTCCAGCAGATATGA 1041 0.3852 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLLNSETHIKEEKKGIISTETPSMLIPISEAGVLATSTTGSAFLMSDSNYYDNGVTTTVTEASREVFNPLSYFEFQIGVPQIGYNYNSSLIRQFDQNQFNGFMPCSDNGNVSVAEFSDNNSASKISCNLLVKKSCSNSSTMSVYPAGMENAVFSWGEENKMDPLLEFEINGAKSKELMKTSSWQEEELLTQNSMDFSSYPLTSLSEDLTGANFDVFQQI. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02994 346 Gene3D - 69 143 - -
Seca4g02994 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g02994 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g02994 346 PANTHER MYB DOMAIN PROTEIN 55 1 298 - -
Seca4g02994 346 CDD SANT 70 109 IPR001005 -
Seca4g02994 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g02994 346 FunFam Transcription factor MYB86 69 139 - -
Seca4g02994 346 CDD SANT 17 61 IPR001005 -
Seca4g02994 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g02994 346 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca4g02994 346 SMART sant 66 114 IPR001005 -
Seca4g02994 346 SMART sant 13 63 IPR001005 -
Seca4g02994 346 Gene3D - 11 67 - -
Seca4g02994 346 FunFam Myb transcription factor 11 67 - -
Seca4g02994 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g02994 346 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02994 Seca-Chr4 51324252 51325995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02994 1 143 MYB Transcription Factor Family AT4G01680 79.720 2.06e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g02994 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02994 K09422 - gmx:100799243 469.929