Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02990 ATGACGACGAGGTTCAAGAAGAACAGGAAGAAGAGAGGTCACGTGAGCGCCGGCCATGGTCGTATCGGAAAACACAGGAAGCACCCTGGAGGTAGAGGTAATGCTGGAGGCATGCACCATCACCGAATCCTCTTTGACAAATACCATCCTGGATATTTCGGCAAGGTTGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTATTGCCCCATCCTCAACATCGATAAGCTCTGGTCCCTCCTTCCCCAAGACGCCAAGGAAAAGGCTTCAAAGGAAACCAGCAAAGCCCCCTTGATTGATGTCACTCAGTTTGGATACTTCAAGGTTTTGGGAAAAGGTGTTTTGCCTCCCAATCAGCCCCTCGTTGTGAAGGCCAAACTCGTTTCCAAGATCGCCGAGAAGAAGATCAAGGAAGCTGGTGGAGCCGTCGTCCTTACCGCTTAA 447 0.5078 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPILNIDKLWSLLPQDAKEKASKETSKAPLIDVTQFGYFKVLGKGVLPPNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02990 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
Seca4g02990 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Seca4g02990 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Seca4g02990 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Seca4g02990 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Seca4g02990 148 FunFam 60S ribosomal protein L27a 58 148 - -
Seca4g02990 148 Gene3D - 58 148 - -
Seca4g02990 148 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02990 Seca-Chr4 51239831 51240277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02990 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 85.135 4.59e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02990 K02900 - ini:109177037 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02990 4 51239831 51240277 Seca4g02990 4 51239831 51240277 ECH