Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02989 ATGGAAACCAAACCCGGCCAAACCATCAAGCTCCTCTGTAGCTACGGCGGCAAGATCCTTCCTCGCGCCACCGATGGTGAGCTCCGTTACGTTGGCGGCCACACCAGAGTACTCGCCGTCGATCGTTCCATATCCTTTTCTGAATTGATGGTGAAACTGGGAGAGTTGTGCGGTTCGTCTGTGATCTTGAGGTGTCAATTGCCCAAGGGAGACTTGGAGACCTTGATCTCCATCACCAGCGACGAAGATTTGGCCAACATAATTGAGGAATATGATCGTGCCTCGTCGAAGTTAACTCATCCGTTGAAGATCAAAGCCGTTCTTTCACCGCCAAAATCAATGAAGAAGGTTTCTCCTGTTCCGTCGTCTTCGTCCAGTGCTAGTCCCTCTCCATCCAGATCGCCTCATACCTCATCCGAATCGCTGCCGTACGCGGCGGTTCATCGCATCAGCCGCTTCAATCGCTCGCCGCGGGCGCCGGTAGGGTATCCGATCGGCTTCCGTAATGGATCGGCGAAAGCTGGTTGCTACCAGGGCCGGTTCGAGGGAAGCCCAAGGTTCCTCTATTGTGGGCCTCACTGCAACAATTACTGCCACTGA 600 0.5417 METKPGQTIKLLCSYGGKILPRATDGELRYVGGHTRVLAVDRSISFSELMVKLGELCGSSVILRCQLPKGDLETLISITSDEDLANIIEEYDRASSKLTHPLKIKAVLSPPKSMKKVSPVPSSSSSASPSPSRSPHTSSESLPYAAVHRISRFNRSPRAPVGYPIGFRNGSAKAGCYQGRFEGSPRFLYCGPHCNNYCH. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02989 199 MobiDBLite consensus disorder prediction 112 141 - -
Seca4g02989 199 SUPERFAMILY CAD & PB1 domains 25 114 - -
Seca4g02989 199 MobiDBLite consensus disorder prediction 116 141 - -
Seca4g02989 199 CDD PB1_UP2 12 97 - -
Seca4g02989 199 PANTHER OS05G0427100 PROTEIN-RELATED 7 152 - -
Seca4g02989 199 SMART PB1_new 23 111 IPR000270 GO:0005515
Seca4g02989 199 Gene3D - 29 107 - -
Seca4g02989 199 Pfam PB1 domain 27 97 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02989 Seca-Chr4 51188447 51189377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02989 9 96 MAP Kinase Kinase Kinase AT5G57610 48.864 4.30e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02989 - - lja:Lj0g3v0315899.1 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02989 4 51188447 51189377 Seca4g02989 4 51188447 51189377 ECH
Seca12g01623 12 17553528 17554831 Seca4g02989 4 51188447 51189377 PCT