Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02978 ATGGCTTTGGTGTCTAGGGTTTTCCATACTGTGAAAAATGTGTGTGGGAGGCGGGAGAATTGGAGGTTGAAGATGAAGGTGGTTAGGGTGTGGCCTATGTATGTCGTCACTACACCGAACGATCCTTTTGCCCTTCAAGTGTTATTTGTTGATGGGGAGGGTCAGATGATTGAAGTTGTTGTTTACAAGGAGAACATGAAGAGGTTTGTGAAAGCATTTGTTGAGGGAGATGTGTATAAGGTTACCAACTTCGGTGTGAGTCGGAACACCGGTAGGTTTAGAGCTGCTCGTCATGATTATAAGTTGGTTTTCAATGCCAACACGAAGGTCCAACTTTGCCAGGGGATATCATTTCCTTTTCCAAGGCTAGCCTTGGTGAAGTCTTCTGAAATAAGGCAGACCTGTGGAAATTCAAACTATCTGTTAGATTTTATGGGGGTTCTTACTGCTGTCTCAGAGGAAATTAATCTGAACAAGGAAGGGAGGCAAACTAGGCTTATGTTGCTGGACTTAGTTGATGAAGAGGGGGATATAAGGTGTGCTGTTTTCGGGGAGATGGTTAATACTGTGTCAGGCTTGCTTTCGTCAACAACCATAGGACTCCCAGTCGTCATCATTCAGCTGGCAAGGGTTAATTTGTACAAGGGCAAAGTAGGAATCAAAAATGTCTTGAATGCTTCTAGGATTTACTGGAACCCGGATCTGCCAGAGGCTATAGAGTTCAAAACGAGACAGGCGCCGTCCATGAGCGATGAGTTTTTGCATGTATACCCAAGGAAACGAATATCTATGTTGGCTGAAGTGGAGGAGGACGGTTTCTTCATCATATTAGCAAGGATTAGTGAGATTCTTGAGGATTGCAGGTGGTGGTACACGGCTTGCACTTGTATGAGATGCATCAAATTTGATCGTGGATATCCATTCTGTGAACATTGCAATGCATGCGTCTTCGAATTGACGTCGAGTTGTAGGGATTTGCTATCCGTTAACAAGGGTAACTCACCTGATGAATTCCCAGAAGAGATTAGTAGGTTGGTTGGGAAGGAACTCCTTCTTCGAATTGAGCGGCAAGGAGACGGACTATATACATATGATGACTGCTACAAAGTTGCAAGCATATGTACAGATTTGGATCTCATTGAAGATTTTAGATCAAAAATGGAAGAAGAAACACCAATTAAGATGAAATTTGCCCCACATTTCACCAAAATGGGAATGGTTGACGGAGAGACATCTGCATATGTTACCAAAATTGCATTGCTTGAGGGTGATAGCTCTGCTGTTGAAGTTTCACCACACGGGAATTCTGGAGTATCCGAGCTTAGCGTTACCCCATTCTCATCGGGAGGTTCATCCTCCAGCCCTGGGGAAAGTATCTCTGTTGTGAAAAGTCTTGGCAGTGATTCTTTGGAGGGACCCTCAGAGAACAAAACTATCCCCACGATGAAGGGCGTTAAGATTGAGTAA 1467 0.4397 MALVSRVFHTVKNVCGRRENWRLKMKVVRVWPMYVVTTPNDPFALQVLFVDGEGQMIEVVVYKENMKRFVKAFVEGDVYKVTNFGVSRNTGRFRAARHDYKLVFNANTKVQLCQGISFPFPRLALVKSSEIRQTCGNSNYLLDFMGVLTAVSEEINLNKEGRQTRLMLLDLVDEEGDIRCAVFGEMVNTVSGLLSSTTIGLPVVIIQLARVNLYKGKVGIKNVLNASRIYWNPDLPEAIEFKTRQAPSMSDEFLHVYPRKRISMLAEVEEDGFFIILARISEILEDCRWWYTACTCMRCIKFDRGYPFCEHCNACVFELTSSCRDLLSVNKGNSPDEFPEEISRLVGKELLLRIERQGDGLYTYDDCYKVASICTDLDLIEDFRSKMEEETPIKMKFAPHFTKMGMVDGETSAYVTKIALLEGDSSAVEVSPHGNSGVSELSVTPFSSGGSSSSPGESISVVKSLGSDSLEGPSENKTIPTMKGVKIE. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02978 488 Gene3D - 117 250 IPR012340 -
Seca4g02978 488 MobiDBLite consensus disorder prediction 441 488 - -
Seca4g02978 488 Gene3D - 255 324 IPR012340 -
Seca4g02978 488 CDD RPA1_DBD_B_like 143 245 - -
Seca4g02978 488 MobiDBLite consensus disorder prediction 441 476 - -
Seca4g02978 488 Gene3D - 6 113 IPR012340 -
Seca4g02978 488 CDD RPA1_DBD_A_like 22 110 - -
Seca4g02978 488 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Seca4g02978 488 SUPERFAMILY Nucleic acid-binding proteins 8 118 IPR012340 -
Seca4g02978 488 SUPERFAMILY Nucleic acid-binding proteins 129 244 IPR012340 -
Seca4g02978 488 SUPERFAMILY Nucleic acid-binding proteins 263 371 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02978 Seca-Chr4 50992491 50994981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02978 1 347 Core DNA Replication Machinery Family AT5G08020 22.656 1.37e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02978 - - lja:Lj6g3v0884310.1 287.73