Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02974 ATGAGTGCTCCTATGGAGACGGAGGTCACCCTGCAGCAGCAAAATCACGAAACCGATCAAAACGGCGTCGCTTCCCAGCACTCACCAACTTCTTCTACGCTTCCCGAAGACAAAGTTCTTGTCCCTGTTGAGGTATGCTTAAAACCTTCCAGCACAGCTCCGATACACGATGTCCGTTCAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATATTGATGGACCCATTCCCGTGCCCCTTGATGAACCATTTCTTGCAGATAACGTGCAAAGAATTTGCGTTTGTGAAACAGATGAAGGGATGCACAATGATAATGTACTTTTGTTCTGGCAAGTTAAGCCTGTTGTACACGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAGCGGTTGTTACGTTATGCAGCGAGTGCTTTGCTCTTTACCGAGAAAGGTGTTGATCCATTCCTTGTTTCATGGAACCGAATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGATACCCACAGTGCCAACTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTAGTTAACGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATGATTCTAACCACATCCAACATAACTGCTGCTATCGATATTGCATTTGTTGATCGAGCTGATATCAAAGCTTATGTTGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAACTGATCCGTACAGGGATATTAACTAGTTTTCAGGATTGTAAGAATGCCATGCTTCCAAATTATGCTAGTGCAAAGCAGAGGTTGAACGCACCAGATTTTGTTGAGGCTGCTACATCCATGCAACTATGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGTAGGGAAAAAATTACTACTCATGGATCATGAACCTCAATCTTTTGCTTGA 1281 0.4254 MSAPMETEVTLQQQNHETDQNGVASQHSPTSSTLPEDKVLVPVEVCLKPSSTAPIHDVRSAVEGMLEKRSLSYIDGPIPVPLDEPFLADNVQRICVCETDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVMILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSFQDCKNAMLPNYASAKQRLNAPDFVEAATSMQLCKQLLETAEACEVGKKLLLMDHEPQSFA. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02974 426 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Seca4g02974 426 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Seca4g02974 426 CDD RecA-like_Pch2-like 140 338 - -
Seca4g02974 426 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Seca4g02974 426 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Seca4g02974 426 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 17 410 IPR044539 -
Seca4g02974 426 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Seca4g02974 426 Gene3D - 133 357 IPR027417 -
Seca4g02974 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 358 IPR027417 -
Seca4g02974 426 SMART AAA_5 190 342 IPR003593 GO:0016887
Seca4g02974 426 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02974 Seca-Chr4 50869742 50875892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02974 139 357 Calmodulin-binding Proteins AT3G56690 30.357 4.92e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02974 K22399 - gmx:100795009 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02974 4 50869742 50875892 Seca4g02974 4 50869742 50875892 ECH