Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02972 ATGGCAATTGCTTCTTCAGCAGCAGCAACAGCTTCCTCAAAGCTTCTATACCCACCACATGCATCTTCCACCTCCCCTTCCACTTCTAGAACCTTCCCCTCCTCCACCACCAACCACAAACTAACCCCATTGTCATCCTCATTCCTCAACCCCTCCACCATCCTCCACGTCACCCCTTCCTCCTCCCGCCGCCACCACCGCCACTCCTCCTTCACCGTCCGCGCCGCCCGCGGCAAATTCGAGCGTAAGAAGCCTCATGTCAACATCGGCACCATCGGCCACGTTGACCACGGCAAAACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAAATCGACGCCGCACCGGAAGAACGCGCTCGTGGTATCACCATCAACACCGCCACCGTCGAATACGAAACCGAAACCCGCCACTACGCTCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCTCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCTATGCCCCAAACCAAAGAACACATCCTCCTCGCCAAACAAGTCGGTGTCCCTAACATGGTCGTCTTCCTCAACAAACAGGACCAAGTCGACGATGAAGAGCTTCTCCAACTCGTTGAACTCGAAGTTCGGGAGCTTCTCTCCTCTTACGAGTTCCCCGGCGATGACATCCCTATCGTTTCCGGTTCCGCTCTCTTAGCCTTGGAAGCTTTAATGGCAAACCCTGCCATCAAACGTGGCGAGAATCAATGGGTTGATAAGATCTACGAACTCATGGATTCTGTTGACAGTTACATCCCAATCCCTCAGCGTCAAACGGATCTTCCCTTTTTGCTCGCCGTGGAAGACGTTTTCTCCATCACCGGTCGTGGAACCGTCGCCACCGGGAGGGTGGAGAGAGGGACTATTAAAGTGGGTGAGACTGTTGACCTTGTGGGATTGAGGGAAACAAGGAACACCACAGTGACTGGTGTGGAAATGTTCCAGAAGATTCTGGATGAGGCTATGGCTGGGGATAATGTGGGGTTATTGCTTAGGGGTGTTCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGGACTATTACTCCACACACAAAGTTCACTGCAATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGGAGACACTCACCTTTCTTTGCTGGGTATAGGCCTCAGTTCTATATGAGGACCACAGATGTGACTGGGAAAGTGACTTCCATCATGAATGATAAGGATGAGGAATCGAAGATGGTGATGCCAGGAGATCGTGTGAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGGGAAGGAGGGAAGACTGTTGGTGCTGGTGTTATCCAATCTATCCTTGAGTGA 1452 0.5337 MAIASSAAATASSKLLYPPHASSTSPSTSRTFPSSTTNHKLTPLSSSFLNPSTILHVTPSSSRRHHRHSSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGVQKVDIQRGMVLAKPGTITPHTKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSILE. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02972 483 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 125 140 IPR031157 -
Seca4g02972 483 Hamap Elongation factor Tu [tuf]. 75 483 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca4g02972 483 FunFam Elongation factor Tu 75 287 - -
Seca4g02972 483 NCBIfam small GTP-binding protein domain 87 219 IPR005225 GO:0005525
Seca4g02972 483 CDD EF_Tu 85 287 IPR041709 -
Seca4g02972 483 Pfam Elongation factor Tu domain 2 309 377 IPR004161 GO:0005525
Seca4g02972 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 310 IPR027417 -
Seca4g02972 483 CDD EFTU_II 295 381 IPR033720 -
Seca4g02972 483 Gene3D Translation factors 422 482 - -
Seca4g02972 483 MobiDBLite consensus disorder prediction 14 45 - -
Seca4g02972 483 CDD EFTU_III 384 478 - -
Seca4g02972 483 Gene3D Translation factors 290 418 - -
Seca4g02972 483 SUPERFAMILY Translation proteins 289 385 IPR009000 -
Seca4g02972 483 Pfam Elongation factor Tu GTP binding domain 84 285 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PANTHER ELONGATION FACTOR TU-RELATED 54 482 - -
Seca4g02972 483 Gene3D - 76 287 IPR027417 -
Seca4g02972 483 FunFam Elongation factor Tu 422 482 - -
Seca4g02972 483 FunFam Elongation factor Tu 290 418 - -
Seca4g02972 483 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 288 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PRINTS GTP-binding elongation factor signature 168 179 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PRINTS GTP-binding elongation factor signature 152 162 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PRINTS GTP-binding elongation factor signature 132 140 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 PRINTS GTP-binding elongation factor signature 88 101 IPR000795 GO:0003924|GO:0005525
Seca4g02972 483 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 382 482 IPR009001 -
Seca4g02972 483 Pfam Elongation factor Tu C-terminal domain 382 481 IPR004160 -
Seca4g02972 483 NCBIfam elongation factor Tu 76 483 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02972 Seca-Chr4 50836015 50837466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02972 82 481 Eukaryotic Initiation Factors Gene Family AT5G60390 30.872 5.30e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02972 K02358 - jre:108984280 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02972 4 50836015 50837466 Seca4g02972 4 50836015 50837466 ECH
Seca12g01637 12 17669733 17671187 Seca4g02972 4 50836015 50837466 PCT