Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02968 ATGCCGCCGGATTCAACCGAGCAAGACGATGATCCTGAAAACGAGTTCGCCGAAATTGATCCCACCGGTCGATATGGTCGGTACAAGGAAGTTTTAGGGAAGGGGGCTTTCAAGAAAGTATACCGAGCGTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAAGTTAAGGTGGCTGATCTAGTGCGTAACTCTGTGGACTTGGAGCGCCTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAATTTTACAATTCATGGGTTGATACCAAGAATGAGAATATAAACTTCATTACTGAAATTTTCACCTCAGGAACATTGCGACAATACCGGCAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTCATATCTTCATAGTCATAATCCGCCAGTTATTCATCGAGACGTCAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGTGAGGTGAAAATTGGTGATTTAGGGTTGGCGGCCATCCTTCAACAGGCCAATTCAGCTCACAGTGTTATAGGTACCCCAGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAACGAGCTTGTTGATATCTATGCTTTTGGGATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCTTGAAGTTAAAGCCTTTATAGAAAAGTGTATCGCTAATGTATCAGAACGGTTGCCTGCAAAGGATCTCTTAATGGATCCCTTCCTTCAGTCAGATTATGATAGTGAAAGTATAGGCCGATCTTTAAGATCCGGAACCCATCATTCAGGAAATAAATGTGATATTCAAGCTGTTGGAAAAGGTGTGGTGGATAATTCTGTTGAGACAAGTAGGGAATTCACTGTTGAAGGTCAGAGGAGAGATGTTAATACAATATTTTTGAAACTGCGAATTGAAGATTCCTCAGGTTATATTCGCAATATCCACTTCCCTTTTGATGTCGGAGCTGATACTTCAATCTCAGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTTCAACTATTGCTAAGATGATTGACTCAGAAATTCGATATCACATTCCTAGTTGGAATCCCAGTGAAACTCCTGTCAATTGTTCTTGTCAAGATCCAGGCAGTGCCTCTGAAACTAAGCCTGAGGCTTCTCCTATGGGAAATGAATCTATCACTCCTACTAGCAGTCTTGCGTTAGAAATATTACCTTCAGGTCGTAAATACTGGTCAGACTCACCAAAGGCTGTCGGTGGAAGCTCTCCATCTCGGCATGGTGCTTCAAACTTGTGTTATGAAGTGGATGCGAATGCTGGGGAAGCCAGCTTTGCTGCAAATAGTGCGAAGGAATGTGATGGGACGGCTGATCCCCCTTTCAGCAAGAGAAGTATTACATCGGAGTATTTAAAAGCAACTGGTGAAAAATCTTCTCAAGAAGCAATTTCTGGAAGTTTGAAAGATTCTGAAAAAGAATACATCAATAAAATGGCAATAAAACTGGAGAAATTGTTGGTTAAGCAAAGAGAGGAGGTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAAATCTTCTGCAGGAACTTTCTCCAGAAATGTGCCAGAAGGTCCTTAATATATGCAACCTGCAGGTGCCTGACGGTGGAATGTAG 1782 0.4136 MPPDSTEQDDDPENEFAEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLVRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRQKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDVKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDLEVKAFIEKCIANVSERLPAKDLLMDPFLQSDYDSESIGRSLRSGTHHSGNKCDIQAVGKGVVDNSVETSREFTVEGQRRDVNTIFLKLRIEDSSGYIRNIHFPFDVGADTSISVAGEMVEELELTDQDVSTIAKMIDSEIRYHIPSWNPSETPVNCSCQDPGSASETKPEASPMGNESITPTSSLALEILPSGRKYWSDSPKAVGGSSPSRHGASNLCYEVDANAGEASFAANSAKECDGTADPPFSKRSITSEYLKATGEKSSQEAISGSLKDSEKEYINKMAIKLEKLLVKQREEVDELKRKHKLAVSNLLQELSPEMCQKVLNICNLQVPDGGM. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02968 593 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g02968 593 Gene3D Transferase(Phosphotransferase) domain 1 109 291 - -
Seca4g02968 593 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Seca4g02968 593 Coils Coil 540 567 - -
Seca4g02968 593 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 396 IPR024678 GO:0004674|GO:0005524
Seca4g02968 593 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g02968 593 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 560 - -
Seca4g02968 593 CDD STKc_WNK 24 284 - -
Seca4g02968 593 Gene3D - 338 430 - -
Seca4g02968 593 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Seca4g02968 593 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02968 593 MobiDBLite consensus disorder prediction 408 438 - -
Seca4g02968 593 FunFam Probable serine/threonine-protein kinase WNK3 338 429 - -
Seca4g02968 593 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02968 593 SUPERFAMILY Protein kinase-like (PK-like) 20 285 IPR011009 -
Seca4g02968 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Seca4g02968 593 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Seca4g02968 593 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02968 Seca-Chr4 50813338 50817629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02968 102 590 MAP Kinase Kinase Kinase AT3G48260 54.472 4.04e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca4g02968 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02968 K08867 - gmx:100301899 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02968 4 50813338 50817629 Seca4g02968 4 50813338 50817629 ECH