Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02958 GCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATACCACTAGTTCTCTGTTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGAAGGCCATTACATGTTTGAGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGCGAAGGAACTTTTGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAAGAAATGGTTGCCGTAAAAATTGTACGCGGGGTAAAGAAGTATCGAGAGGCAGCCATGATTGAAATTGAGGTGCTGCAACACCTTGGCAAACATGATAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTGTAGCATGTGTGTAG 531 0.42 AQVGLFCGQEVENISSYAPSEHTTSSLFKGVARNGSPPWRDDDKEGHYMFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEVLQHLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVACV. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02958 176 FunFam Serine/threonine-protein kinase AFC2 47 140 - -
Seca4g02958 176 Gene3D Transferase(Phosphotransferase) domain 1 114 175 - -
Seca4g02958 176 ProSiteProfiles Protein kinase domain profile. 60 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02958 176 Pfam Protein kinase domain 60 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02958 176 SMART serkin_6 60 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02958 176 SUPERFAMILY Protein kinase-like (PK-like) 47 174 IPR011009 -
Seca4g02958 176 Gene3D Phosphorylase Kinase; domain 1 47 140 - -
Seca4g02958 176 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 22 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02958 Seca-Chr4 50719938 50721004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02958 46 170 EF-hand Containing Proteins AT5G22840 32.824 1.35e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca4g02958 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02958 K08287 - gmx:100808961 347.051