Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02955 ATGGAAGCACTATCCCTTCCCATAAACACTCTCACTCTCACCAATTCTAATGCCAACTACATTTCTCTGGGTGCTTCTTCTAATTATGCCTCACTCTCTTCCTTACAACTCTCTTCTTCTTCCACAATCACACCCCTCACTTTGAAGAGTGTCGTTAGAGTGCAAGCTGAGAGTGAGGATTATGAATTGAAGCAAATGAGGGACATGGCTGCTGCCAGAAAGAGATGGGAAGCTCTGATCAGGGATGGAAAAGTTAAAGTTCTCACCCCAAGGGAAGCTGGGTATGCAGTTCAGCTTTCAAATAAGCCTCTTCTTGATGTTCGCCCCTCAAATGAGCACAACAAGGCATGGGTGAGAGCTGCAACCTGGATTCCAATATTTGATGTTGATAATGGACTAGATGTTGGAACCATTCCCAGAAAAATCACAAATTTTGTTATGGGAGGTTGGTGGAGTGGCATGCCTACACTGTCATATGATAGCCAGTTCTTAGCCAAAGTGGAGGAGAAGTTCCCCAAAGACACAGAATTAATTGTTGCATGCCAGAAGGGACTGAGATCACTAGCTGCTTGTGAGCTACTGTATAATGCTGGCTATGAAAATTTGTTCTGGGTTCAAGGAGGCTTAGAGGCTGCTGAAGAAGAGGATCTTGTTGTAGAGGGTCCAGTGCCTCTTAAGTTTGCTGGAATTGGTGGTGTTTCAGAATTCCTTGGTTGGACTGATCAACAAAGAGCTGCGGCAGCCAAGGAAGGTTGGGGATATAGATTAGTGTTTTCTGCACGCTTGGTAATCTATCTATTGTATGTTTTAAGTTGTAAATTTTATTTCTTAATCTTGACATCACAAGTTGGATTGTTTCTGGCATAG 867 0.4325 MEALSLPINTLTLTNSNANYISLGASSNYASLSSLQLSSSSTITPLTLKSVVRVQAESEDYELKQMRDMAAARKRWEALIRDGKVKVLTPREAGYAVQLSNKPLLDVRPSNEHNKAWVRAATWIPIFDVDNGLDVGTIPRKITNFVMGGWWSGMPTLSYDSQFLAKVEEKFPKDTELIVACQKGLRSLAACELLYNAGYENLFWVQGGLEAAEEEDLVVEGPVPLKFAGIGGVSEFLGWTDQQRAAAAKEGWGYRLVFSARLVIYLLYVLSCKFYFLILTSQVGLFLA. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02955 288 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 268 IPR044664 -
Seca4g02955 288 Pfam Rhodanese-like domain 94 211 IPR001763 -
Seca4g02955 288 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 83 220 IPR036873 -
Seca4g02955 288 SMART rhod_4 88 218 IPR001763 -
Seca4g02955 288 Gene3D - 85 254 IPR036873 -
Seca4g02955 288 CDD RHOD 104 211 - -
Seca4g02955 288 ProSiteProfiles Rhodanese domain profile. 98 221 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02955 Seca-Chr4 50696292 50700085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02955 1 262 Sulfurtransferasese or Rhodanese AT4G24750 68.797 1.43e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02955 - - gmx:100791331 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02955 4 50696292 50700085 Seca4g02955 4 50696292 50700085 ECH