Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02944 ATGTCTATCTCTTCCACTGCCTTCAACTCCCTCACCATGGCAGAATCCTGCCTTCTCTCTTCTCCCTCCTCCCTCTTCTATAACAAAGCCAAACACTACCCTTTTTTCTCAATTCCCTCCAAACCCCTCAAACTCCAACTCTCATGCCTCAATTATTCTTCCCCCTCTCTCTCCCTCACTTCCAGAACCCACCGCTCTCCCATGCCCCTTTTCGTCGCCCAAACTTCAGACTGGGCCCAGCAAGGAGACAACACAGACACAGTCACCCTACAAGACCAATCAGAAGGAGAAGGAGAAGGAGAAGGTGTGAGTGAAACCGAAGCAGGACTTTCGGATTGGGAACCCAACGGCGAAGACGCAGAAACCGAGGGCGACGAAGAAGGGGGTTTCGTGGAACCACCTGAAGATGCAAAACTCTTCGTTGGAAACTTGCCTTACGATGTTGATAGTCAGAAATTGGCCATGCTTTTCGAGCAGGCTGGAACCGTCGAAATTGCTGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGTGGCTTCGGATTTGTGACCATGAGTACAGTTGAAGAAGCTGAGAAGGCTGTGGACAAGTTTAACCGTTATGATTATGATGGAAGAATGTTGACAGTTAATAAGGCTTCTCCAAGAGGATCTCGGCCTGAACGCCCACCTCGTACCTTTGAACCTGCCTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGATAACACTCGGCTGGAGCAAGTTTTCAGTGAACACGGTAAGGTTGTGAGTGCTCGGGTTGTCTATGACAGAGAGTCTGGTCGATCACGTGGCTTTGGATTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGACAATCAGAGTGAATGTTGCCGAGGATAGGCCCAGGCGGGGTTCCTTTTGA 951 0.49 MSISSTAFNSLTMAESCLLSSPSSLFYNKAKHYPFFSIPSKPLKLQLSCLNYSSPSLSLTSRTHRSPMPLFVAQTSDWAQQGDNTDTVTLQDQSEGEGEGEGVSETEAGLSDWEPNGEDAETEGDEEGGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDKFNRYDYDGRMLTVNKASPRGSRPERPPRTFEPALRVYVGNLPWDVDNTRLEQVFSEHGKVVSARVVYDRESGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVNVAEDRPRRGSF. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02944 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Seca4g02944 316 MobiDBLite consensus disorder prediction 112 130 - -
Seca4g02944 316 MobiDBLite consensus disorder prediction 76 94 - -
Seca4g02944 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 221 315 - -
Seca4g02944 316 SUPERFAMILY RNA-binding domain, RBD 133 225 IPR035979 GO:0003676
Seca4g02944 316 PANTHER OS02G0815200 PROTEIN 20 311 - -
Seca4g02944 316 MobiDBLite consensus disorder prediction 76 133 - -
Seca4g02944 316 CDD RRM2_NsCP33_like 232 307 - -
Seca4g02944 316 SUPERFAMILY RNA-binding domain, RBD 224 314 IPR035979 GO:0003676
Seca4g02944 316 SMART rrm1_1 232 305 IPR000504 GO:0003723
Seca4g02944 316 SMART rrm1_1 138 211 IPR000504 GO:0003723
Seca4g02944 316 Gene3D - 74 220 IPR012677 -
Seca4g02944 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 220 - -
Seca4g02944 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Seca4g02944 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Seca4g02944 316 Gene3D - 221 316 IPR012677 -
Seca4g02944 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02944 Seca-Chr4 50571305 50574561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02944 125 313 Eukaryotic Initiation Factors Gene Family AT3G16380 35.323 2.73e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02944 - - gmx:100810381 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01656 12 18018522 18021370 Seca4g02944 4 50571305 50574561 ECH
Seca4g02944 4 50571305 50574561 Seca4g02944 4 50571305 50574561 ECH
Seca12g01656 12 18018522 18021370 Seca4g02944 4 50571305 50574561 PCT