Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g02940 | ATGAAAATCTACAACCACCTCTTTCTCCTTTCATTCTTTTCCTTCTTTTTCTTCTTCTCTTCCATCCATGTCCATGCCAAGCTTGATCTCCACCCTTCAGACTCAAAGGCTCTCTTAGGAATCCAAAATGACCTCCGAGTCAACGGTCAACCTCTAACAACCACCGTTCACCCATGTAACACGGAGGGTGTGTTCTGCGAGAGGAGGCTCTCCAACAACGAGAGCTACTATTTCCTCAGAATCACGAGACTCGTCTTCAACTCCAAACACCTCAATGGAGCGCTTTCCTCTGCCATAGGACGCCTCACAGAGCTCAAAGAACTCTCTCTTCCTAACAACAAAATCGTTGACCGAATCCCACCTCAGATAGTTGACTGCAGAAAGCTTGAGATTCTCGACCTCTCTAACAACCTCTTCTCAGGCCAAGTCCCTTCTCAATTATCCTCTCTCATTCGCCTTCGCGTCCTTGATATCTCCTCCAACAAACTCTCTGGAAACTTGAATTTCCTTAGGTTTTTCCCCAATCTTGAATCTCTCTCTATAGCGAACAATCTCTTCACTGGAAGAGTCCCTGCTTCTATTCGTTCCTTTCGCAATCTCAGACACTTCAACTTCTCTGGGAACCGTTTCCTCGAAGGTTCTCTGCTTCAATTTGAATCGGAAACAGAAACAATCCCTAAACGCTATATCTTTGCTGAGAATTCAAATGGAGGAGGAACGAATGATGCTGCTCCTGCACCTGCGCCATCAAAGAAAAAATCAAATTCATCTGTTGTTGCTGCTGCTCCTGGTCCTGCTTCACACCACCACAGGCACAAGTCAAGCAAGAGGAAACTAGCTGGCTGGATTGTTGGGTTTGTGGCTGGTGCATTTGCTGGGACTCTTTCTGGGTTTATATTTTCCTTGTTGTTTAAATTGGCTTTGGCTTTGATCAAAGGTGGTGGAAAAGGGTCTGGTCCTGCAATTTATAGTCCCTTGATTAAGAAAGCTGAGGACTTGGCTTTCTTGGAAAAGGAAGATGGGTTGGCTTCTTTGGAAATCATTGGAAGAGGTGGCTGTGGAGAGGTTTACAAGGCTGAATTACCTGACAGCAATGGCAAATTGATTGCCATAAAGAAGATTGTTCAGCCTCCTAAGGATGCTGCTGAGTTGGCTGAAGAAGATAGCAAGCTTCTGCATAAGAAAATGCGCCAGATTCGATCAGAGATTCAGACTGTTGGTCAAATTCGACACAGGAACCTTCTTCCTCTGTTGGCTCATGTGTCTAGGCCTGATTGTCACTACCTTGTGTATGAGTTCATGAAGAATGGAAGTTTGCAGGATAAGTTGAACAGTGTTGAAAGGGGTGAAGGGGAGTTGGATTGGATAACAAGACACAAGGTTGCACTTGGTGTTGCTGCTGGTCTTGAATACCTTCACATGAGTCATAGTCCTCGTATAATTCATAGGGACCTCAAGCCTGCAAATATTCTTCTTGATGATGATATGGAAGCTAGGATTGCAGATTTTGGGCTTGCAAAAGCTATGCCAGAGTATCAAACACATATCACAACTTCTAATGTAGCTGGCACTGTGGGATATATAGCACCTGAGTATCACCAGATACTTAAGTTTACTGACAAGTGTGACATATACAGCTTTGGGGTCATACTTGGTGTCTTGGTGATTGGAAAGCTTCCATCTGATGAGTTTTTCCAGCATACAGAAGAGATGAGTTTGGTCAAGTGGATGAGAAAGATGATGACTTCAGAACATCCAAAGGAAGCAATTGATGCAAAGCTTTTGGGGAATGGATATGAGGAACAGATGCTTCTGGTTTTGAAGATTGCTTGCTTTTGCACCATGGATGATCCAAAGGAGAGGCCTAACAGTAAGGATGTTAGGTGTATGCTGACCCAAATCAAGCACTGA | 1911 | 0.4417 | MKIYNHLFLLSFFSFFFFFSSIHVHAKLDLHPSDSKALLGIQNDLRVNGQPLTTTVHPCNTEGVFCERRLSNNESYYFLRITRLVFNSKHLNGALSSAIGRLTELKELSLPNNKIVDRIPPQIVDCRKLEILDLSNNLFSGQVPSQLSSLIRLRVLDISSNKLSGNLNFLRFFPNLESLSIANNLFTGRVPASIRSFRNLRHFNFSGNRFLEGSLLQFESETETIPKRYIFAENSNGGGTNDAAPAPAPSKKKSNSSVVAAAPGPASHHHRHKSSKRKLAGWIVGFVAGAFAGTLSGFIFSLLFKLALALIKGGGKGSGPAIYSPLIKKAEDLAFLEKEDGLASLEIIGRGGCGEVYKAELPDSNGKLIAIKKIVQPPKDAAELAEEDSKLLHKKMRQIRSEIQTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDKLNSVERGEGELDWITRHKVALGVAAGLEYLHMSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPEYQTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDEFFQHTEEMSLVKWMRKMMTSEHPKEAIDAKLLGNGYEEQMLLVLKIACFCTMDDPKERPNSKDVRCMLTQIKH. | 637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g02940 | 636 | Gene3D | Ribonuclease Inhibitor | 168 | 222 | IPR032675 | - | |
| Seca4g02940 | 636 | MobiDBLite | consensus disorder prediction | 236 | 274 | - | - | |
| Seca4g02940 | 636 | FunFam | leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 | 329 | 433 | - | - | |
| Seca4g02940 | 636 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 45 | 635 | - | - | |
| Seca4g02940 | 636 | Gene3D | Transferase(Phosphotransferase) domain 1 | 434 | 636 | - | - | |
| Seca4g02940 | 636 | SMART | serkin_6 | 342 | 635 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca4g02940 | 636 | Pfam | Protein kinase domain | 345 | 625 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca4g02940 | 636 | ProSiteProfiles | Protein kinase domain profile. | 342 | 636 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca4g02940 | 636 | FunFam | Leucine-rich repeat receptor-like protein kinase | 434 | 636 | - | - | |
| Seca4g02940 | 636 | SUPERFAMILY | L domain-like | 56 | 212 | - | - | |
| Seca4g02940 | 636 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 76 | 167 | - | - | |
| Seca4g02940 | 636 | SUPERFAMILY | Protein kinase-like (PK-like) | 337 | 632 | IPR011009 | - | |
| Seca4g02940 | 636 | Gene3D | Phosphorylase Kinase; domain 1 | 332 | 433 | - | - | |
| Seca4g02940 | 636 | Gene3D | Ribonuclease Inhibitor | 33 | 167 | IPR032675 | - | |
| Seca4g02940 | 636 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 480 | 492 | IPR008271 | GO:0004672|GO:0006468 | |
| Seca4g02940 | 636 | Pfam | Leucine rich repeat | 104 | 163 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g02940 | Seca-Chr4 | 50533837 | 50535747 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g02940 | 8 | 636 | Receptor kinase-like Gene Family | AT2G31880 | 63.265 | 0.0 | 810 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-2 | Seca4g02940 | Pkinase | 2.8e-43 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g02940 | - | - | gmx:100811980 | 932.939 |