Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02937 ATGCCACCACAGATAGTTGGCTGCACAAAGCTTGAGATTCTGGACCTCTCTAACAACCTCTTCTCAGGCCAAGTCCCTTCTCAATTGTCCTCTTTTATTCACCTTCGCGTCCTTGATGTCTCTTCCAATAAACTCTCTGGCAACTTGAATTTCCTGAGGTATTTCCCCAATCTTGAGTCTCTCTCTATAGCCAACAACCTCTTCACTGGGAAAGTCCCTTCTTCTATTCGTTCCTTTCACAATCTCAGACACTTCAACTTCTCTGGGAACCGTTTCCTTGAAGATTCTCTGCTACTGAATGAGAGGCTTCAATTTGAATCAGATACAGCTCCCAAACGCTATATCTTTGCTGAGAGTTCAAATGGAGGAGGAAGCAATAGTGCTCCTGCACCTGCCCCATCAAAATCTCACAAGAAAAATTCTACTGTTGTCACATCAGCTGCTAATCCAGCAACAACAGTTCCCCACCATAAGCACAAATCAAGAAAGAGGAGACTAGTTAGGTTGATTCTTGGGTTTGTGGCTGGGGCATTAGCTTTGACTATATTTGGCTTCATTTTTTCTTTAGGGTTCAATCTGGCTTTCATCAAGAGAAGAGGAAAGGAATCAAGCCCTGCAATATTTAGTCCCTTGATTAAAAAAGTTGAGGACTTGGATTTCTTGAAGAAAGAAGATGGACTGGCTTTATTGGAAATTATTGGAAGAGGTGGGTGTGGAGTGGTTTACAAGGCTGAATTATCAGGAATCAATGGCAAAATGATTGCCATAAAGAAGATTATTCAACCTCCTAACCGTGCAGTTGAGTTGGCTGCAGGATACAAAAGGCCTCTAAATAAGAAAATGCGCCAAATTCGAGCAGAGATTAACACTGTTGGTCAAATTCGACACAGGAACCTTCTTCCTCTTCTGGCTCATGTTTCCAGGCCTGATTGTCACTGCCTTGTGTATGAGTTCATGAAGAATGGAAGTTTGCAGGATAAGTTGAACAATGTTGAAAGGGGTGAAGGGGAGTTGGATTGGATAACAAGACACAAGGTTGCACTTGGTGTTGCTGCTGGTCTTGAATACCTTCACATGAGTCATAGTCCTCGTATAATTCATAGGGACCTCAAGCCTGCAAATATTCTTCTTGATGATGATATGGAAGCTCGCATAACAGATTTCTCTAAGGACATTAAGTGGTTTAAACGTTTAATCGAAGATTTCACAGAGCCTGCAACCTTCTCTGGTCTTCACTCGCAAGCTCGCAGAGCTCGTCTTCAATCGCAAGCACACCGCCTTCAATCACGAGCCATTTCGCATAGACGTTGCATTGTTCCTCATCACCGCCTTCAACCTTTCTCCAGTCTTCAATCGCAGTGGGGTTTAGGCATTTGGGTGTTTTTGGTTCTCCTTGTGCTTGACCCTGTCTTTGTCCTTAGTGGTGACAGTAACTTCTGTAGTGAATCAATATGTGTGGGAAGGGCGTATAGGGACATTAAGGGTGCTTTACAGAATGAGGGTTTAGGCATTTGGGTGTCTTTGTTCTCCTTATGCTTGACCTTGACCTTGTCTTTGTCCTTAGTATTTTTTAAGGCTAGCAATGTATTGTTGGATAAGGATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCACAACCACGTTCAAATTTCTAGCACCACAAAATTGGTTGGAACAGTTGGGTACATGGCTCTTGAAAGTGATTGTGGCAATGAGGGGACCAATGGTTTAGGTGTTGCAGCTGGTGGGGTTGGGGCAGGTTGTACTGGTGCAGAAGCAGGGGATAATTGGGCTGAAGTGGTGGTGGAATACAAGAGTTGCAGGAACATGATGGATGGTGTTATTCATTGTGCTAAGCAAGCTGATCCAGTGATGATGAGTGGTTCCTTCAAAGGGTCAGCAATGGTGACAAAGGCATCAAGTGGGGCTAGAAGGCTTGGTTCCCCTTCACTCTCGAACCTTATGGGCAAGAGAAGACCAGGGCAACCAACCACCCATGTGACACAGAGGGCGTCTGTCTTCTGTGAGAGAAGGCTCTCCAACAACAACCACAGCTACCTCCTCAGAATCACTAGGCTTGTCTTTAACTCCAAGCACCTCAATGGGGTGCTTTCACCTGCCATAGGACACCTCACAGAGCTCAAACAACTATCTCTTCCTAACAACGGACTCCTTGACCGAATCCCACCACAGATAGTTGGCTGTACAAAGCTTGAGTATTTCCCCAATCTTGAGTCTCTCTCTATAGCCAACAACCTCTTCACTGGGAGAGTCCCTTCTTCCATTCGTTCCTTTCACAATCTCAGTCCCTTCTCTCTCTATAGCTTTGGGGTTGTGCTTGCTGTCTTGGTCACAGGAAAGGTTCCTTGGGGTGAGTTTTTCCAGCAACCAGGAAATATGAGTTTGGTCAAGTGGATGAGGAAAGTGATGAGTTCAGAAAATCCAAAGGAAGCAATTGATGCAAAGCTTTTGGGGAATGGATATGAGGAACAGATGCTTCTGGTTTTGAAGATTGCCTGCTTTTGCACCATGGATGATCCAAAGGAGAGGCCTAACAGTAACGATGTTAGGTGTATGGTGCTTGTGGTATAG 2601 0.4464 MPPQIVGCTKLEILDLSNNLFSGQVPSQLSSFIHLRVLDVSSNKLSGNLNFLRYFPNLESLSIANNLFTGKVPSSIRSFHNLRHFNFSGNRFLEDSLLLNERLQFESDTAPKRYIFAESSNGGGSNSAPAPAPSKSHKKNSTVVTSAANPATTVPHHKHKSRKRRLVRLILGFVAGALALTIFGFIFSLGFNLAFIKRRGKESSPAIFSPLIKKVEDLDFLKKEDGLALLEIIGRGGCGVVYKAELSGINGKMIAIKKIIQPPNRAVELAAGYKRPLNKKMRQIRAEINTVGQIRHRNLLPLLAHVSRPDCHCLVYEFMKNGSLQDKLNNVERGEGELDWITRHKVALGVAAGLEYLHMSHSPRIIHRDLKPANILLDDDMEARITDFSKDIKWFKRLIEDFTEPATFSGLHSQARRARLQSQAHRLQSRAISHRRCIVPHHRLQPFSSLQSQWGLGIWVFLVLLVLDPVFVLSGDSNFCSESICVGRAYRDIKGALQNEGLGIWVSLFSLCLTLTLSLSLVFFKASNVLLDKDMNGRLGDFGLARMHNHVQISSTTKLVGTVGYMALESDCGNEGTNGLGVAAGGVGAGCTGAEAGDNWAEVVVEYKSCRNMMDGVIHCAKQADPVMMSGSFKGSAMVTKASSGARRLGSPSLSNLMGKRRPGQPTTHVTQRASVFCERRLSNNNHSYLLRITRLVFNSKHLNGVLSPAIGHLTELKQLSLPNNGLLDRIPPQIVGCTKLEYFPNLESLSIANNLFTGRVPSSIRSFHNLSPFSLYSFGVVLAVLVTGKVPWGEFFQQPGNMSLVKWMRKVMSSENPKEAIDAKLLGNGYEEQMLLVLKIACFCTMDDPKERPNSNDVRCMVLVV. 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02937 866 Gene3D Ribonuclease Inhibitor 1 109 IPR032675 -
Seca4g02937 866 SUPERFAMILY L domain-like 2 776 - -
Seca4g02937 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Seca4g02937 866 Gene3D Transferase(Phosphotransferase) domain 1 523 606 - -
Seca4g02937 866 Gene3D Transferase(Phosphotransferase) domain 1 773 864 - -
Seca4g02937 866 SUPERFAMILY Protein kinase-like (PK-like) 525 574 IPR011009 -
Seca4g02937 866 Pfam Protein kinase domain 230 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02937 866 MobiDBLite consensus disorder prediction 119 152 - -
Seca4g02937 866 SUPERFAMILY Protein kinase-like (PK-like) 204 388 IPR011009 -
Seca4g02937 866 Gene3D Ribonuclease Inhibitor 653 772 IPR032675 -
Seca4g02937 866 MobiDBLite consensus disorder prediction 644 670 - -
Seca4g02937 866 SUPERFAMILY Protein kinase-like (PK-like) 776 862 IPR011009 -
Seca4g02937 866 MobiDBLite consensus disorder prediction 119 158 - -
Seca4g02937 866 ProSiteProfiles Protein kinase domain profile. 227 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02937 866 SMART serkin_6 227 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02937 866 Gene3D Transferase(Phosphotransferase) domain 1 212 391 - -
Seca4g02937 866 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 777 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02937 Seca-Chr4 50498511 50505818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02937 776 863 Receptor kinase-like Gene Family AT2G31880 64.773 2.00e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca4g02937 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02937 - - gmx:100811980 514.612