Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02931 ATGTCTTCCTTATATTGGGTTTCTCCTTCGAGTTCTTTGCAATTGCAGGTTGGTAGGATTATACTCCATCATATAAACATACAGGCCTACTCAAACAAAACTATCATCTCTTCCCCTCCTTACTTGTTATCCGTAAGCCATCAACCAACCTGTTTCATCACTCTCAACTCACCCACTTCGTTTATGGATGACCCAATTTCTCCGATTACCTCCTCCACTCGGGTCTTACCCGAACCCGACCTTTATCTACACACCCCCGGCGGGACACGCATTCCAGCGCACGCTACCATTTTGGCTTCCGCGTCCCCAGTTTTAGAGAAAATCGTAACGTCCAACAGAGTCGTTAAAATCCACGGCGTTCCATACGACGCCGTCACCGCCTTCGTAGGGTTCATGTACTCCTCCAGGTGCAGCGAGAAGGAGATGGACAAATACGGAATGCACCTTCTTGCATTGTCGCACGCGTATTCGGTGACTCAACTGAAGCAGAGGTGCATCAAGGGACTGGCTCAACGCGTTACCACAGAGAACGTGGTGGACGTGTTGCAACTGGCGAGGCTCTGCGATGCACCGGATCTTCACCTCAAGTGCGTGAAGCTGCTAACCAATAATTTCAAATCCGCGGCGCAAACAGAGGGATGGAAATTCTTGCACAAGCATGACCCCTGCCTCGAGCTCGACATTCTTCGAGCCATGAACGAACACAAATCGAGGAAGAAGAAAGCGAGGAGGCGAAGAGAGGAGCAGAGGTTGTATGTGCAGCTGAGCGAAGCGATGGAATGTTTGGAACACATATGCACGGAGGGGTGCACACACGTGGGGCCATTCGATGTGGAGCTTAAACAGCAGAAGAGGCCATGCTCTAAGTTCTCCACGTGTCAAGGATTACAGGTGTTGATCCGACATTTTGCCACGTGCAAGAGGAGCCTCAACGCAGGGTGCTTGAGGTGTAAGCGCATGTGGCAGCTCTTCAGACTACACTCCTCCATTTGCCTACACCATGATTCCTGCAAGGTCCCTCTTTGCAGACAAATTCAAATGAAAGCGCAGCAAGAGAACAGGGAAGATGATGCAAGGTGGAAACTACTAGTGAGGAAGGTGGCCTCGGCCAAAGCTATGTCTTCCTTGTCACTGTCAAAGAGGAAGCGGGACCACAAACAATCCTGCGATCAGAAGTTTCGTATTACAATGAGAATTTGTAATGTACAATGA 1212 0.4975 MSSLYWVSPSSSLQLQVGRIILHHINIQAYSNKTIISSPPYLLSVSHQPTCFITLNSPTSFMDDPISPITSSTRVLPEPDLYLHTPGGTRIPAHATILASASPVLEKIVTSNRVVKIHGVPYDAVTAFVGFMYSSRCSEKEMDKYGMHLLALSHAYSVTQLKQRCIKGLAQRVTTENVVDVLQLARLCDAPDLHLKCVKLLTNNFKSAAQTEGWKFLHKHDPCLELDILRAMNEHKSRKKKARRRREEQRLYVQLSEAMECLEHICTEGCTHVGPFDVELKQQKRPCSKFSTCQGLQVLIRHFATCKRSLNAGCLRCKRMWQLFRLHSSICLHHDSCKVPLCRQIQMKAQQENREDDARWKLLVRKVASAKAMSSLSLSKRKRDHKQSCDQKFRITMRICNVQ. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02931 403 CDD BACK 174 221 - -
Seca4g02931 403 SMART BTB_4 79 173 IPR000210 GO:0005515
Seca4g02931 403 Gene3D - 174 244 - -
Seca4g02931 403 SUPERFAMILY TAZ domain 247 347 IPR035898 -
Seca4g02931 403 SMART TAZ_2 249 343 IPR000197 -
Seca4g02931 403 Gene3D TAZ domain 245 370 IPR035898 -
Seca4g02931 403 ProSiteProfiles BTB domain profile. 79 141 IPR000210 GO:0005515
Seca4g02931 403 FunFam BTB/POZ and TAZ domain-containing protein 2 174 244 - -
Seca4g02931 403 SUPERFAMILY POZ domain 80 203 IPR011333 -
Seca4g02931 403 Pfam BTB/POZ domain 80 171 IPR000210 GO:0005515
Seca4g02931 403 FunFam BTB/POZ and TAZ domain-containing protein 2 245 371 - -
Seca4g02931 403 Pfam TAZ zinc finger 256 342 IPR000197 -
Seca4g02931 403 Gene3D Potassium Channel Kv1.1; Chain A 77 173 IPR011333 -
Seca4g02931 403 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 62 384 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02931 Seca-Chr4 50412560 50414812 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca4g02931 BTB 1.8e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02931 - - gmx:100813611 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02931 4 50412560 50414812 Seca4g02931 4 50412560 50414812 ECH
Seca12g01663 12 18088812 18092723 Seca4g02931 4 50412560 50414812 PCT