Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02926 ATGACAAACACTCCATTCTCTTTAGTTTTCTTCCTCTTCTCTCTTCTCACACCAACCCTCATTTCCTCTTCACCTATTCAAAACCCTGAATCTGTAGTTCAAGAGGTAAACAGTTATTTATTTATTTTTGGGTGCAGGAAAATCAATGCCTCGGTATCTAGGAGGAACTTGGGGTATCTGTCATGTGGGAGTGGGAATCCCATTGATGATTGTTGGAGGTGTGGCCAAAATTGGGAGAAGAATAGGCAAAGGCTAGCTGATTGTGCAATTGGGTTTGGGAAGAACGCCATTGGAGGAAGGGATGGTAAGATTTATGTGGTGGACGATGCCGAAAACGATGACCCAGTGAACCCAAAGCCAGGTACACTCCGGCACGCGGTGATTCAAGATGAGCCATTATGGATCATCTTTGCCAGAGACATGGTCATAAAGTTGAAGGAAGAGCTCATCATGAACTCATTCAAGACCATTGATGGTAGAGGCGCGAGCGTGCACATTGCTGGTGGTCCATGCATTACCATACAATACGTTACCAATGTCATCATCCATGGGATACACATACATGACTGCAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGTCATTATGGATGGAGGACTATATCGGACGGTGATGGTGTGTCCATCTTTGGAGCGAGTCATGTATGGGTGGACCATTGTTCGTTATCGAATTGTAACGATGGTTTGATCGATGCCATTCATGGGTCCACCGCTATTACCATCTCAAACAATTACATGACACACCATGATAAGGTCATGTTGTTGGGTCATAGCGATTCCTACACCCAAGACAAGAACATGCAAGTCACTATCGCTTTCAACCACTTTGGTGAAGGCCTCGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCCAATGACAGATTCAGTAAAGAGGTGACAAAGCATGAAGATGCGCCGGAGAGTGAATGGAAGAGTTGGAATTGGAGGTCAGAAGGGGATTTGTTGGTAAACGGTGCGTTTTTCACTGCATCGGGTGCTGGAGCCTCTTCTAGTTATGCAAGAGCTTCTAGCTTAAGTGCAAGACCATCTTCGCTTGTTGGTTCGATAACAACAGGTGCTGGTGCACTTAACTGTAGGAAAGGTTCTCCTTGCTGA 1245 0.4578 MTNTPFSLVFFLFSLLTPTLISSSPIQNPESVVQEVNSYLFIFGCRKINASVSRRNLGYLSCGSGNPIDDCWRCGQNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVDDAENDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGASHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALNCRKGSPC. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02926 414 SMART amb_all 140 337 IPR002022 -
Seca4g02926 414 Pfam Pectate lyase 147 331 IPR002022 -
Seca4g02926 414 FunFam Pectate lyase 65 407 - -
Seca4g02926 414 PANTHER PECTATE LYASE 18-RELATED 27 412 IPR045032 GO:0030570
Seca4g02926 414 SUPERFAMILY Pectin lyase-like 53 409 IPR011050 -
Seca4g02926 414 Gene3D - 65 407 IPR012334 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Seca4g02926 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02926 Seca-Chr4 50347346 50349644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02926 6 414 Polysaccharide Lyase AT5G63180 79.562 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02926 K01728 - gmx:100814679 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02926 4 50347346 50349644 Seca4g02926 4 50347346 50349644 ECH
Seca12g01666 12 18145809 18148293 Seca4g02926 4 50347346 50349644 ECH
Seca6g01802 6 74304052 74306729 Seca4g02926 4 50347346 50349644 ECH
Seca4g02926 4 50347346 50349644 Seca12g01666 12 18145809 18148293 ECH
Seca12g01666 12 18145809 18148293 Seca4g02926 4 50347346 50349644 PCT