Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02923 ATGCCTCAATGGCATTGCTTGCTCATTGCTCCATGTTCTTCTCTTTCTGAAGATAAGATAATGATGGATGGACGGCGGCATTCAGTTGATATTCCTATTTCTAAGACTCTTGTAGCACTGAGGAGAGTTAGGTCGTTGAGGGATCCATCAACTAATCCTATGAGCAAACTCTCCACTTTGGTTGATAATGTGCACTGGGAAAACGACGGTTTAGGCAATGGGATTTCTCTGCTGTTTCCGGATGCTGCTCGTGCATGTGATTCTGATGATAATGTTGCTTTTAGATCAAGGGATTTAGGTTATAAGGGACAAAAAGAGCAGGGTGCTGCTGATTTTGAATTGAATTGTGGCATGTTGAAATCTAGGCTGAAGCCTAGTGGGATGTCATGTCATGGTGGCAAACAAGATGATGAACAAGTTCACTCTGATCCAAATCGGCAATGCATTTCTGGAAGTAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGACCTCCTAGTAATAATTTCAAGGATGGGGAATCATGCTATAGGGCAACTACCAGAACATCTCAATTAGGGAGAATAGATCACTCTAGGTTAGCCATTCGCAAGAATCAAGTAAAACCATCAGAAGTAGTGGGTGGTATTGTTAGCCATTTAGGCAGTCCATGCCTTTCTGTTCGTGACACTTTCTCGCCCCATGGTGCCTCTGTAGGTATAAATCAAGATTTTGATGTTCTAGATAATAATGATGATGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCAAGGTTTAGAGAACCAAATCTTTATAGTGAGATGGAAGACCGTCCCTTGATATTGCACAGCATTGATGACACAGATCTTCATGGACATAGAAGCATGAGAGACAATGGTGGTGAAATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCTAAGTCATTTAGTGATCTGGTAGGGCAAAATGTCGTAGTAAGGTCTCTTTTGGGGGCAATCTCCAGAGGAAGGATAGCATCATTTTATCTCTTTCATGGTCCTCGTGGTACAGGCAAGACATCTGCTTCTAGGATATTTGCTGCTGCATTGAATTGCCTTTCTTCTGTTCAGGAGCAAAGACCATGTGGTCTGTGTAGAGAATGTATTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAATGGGGAGACATGGGCAAGCTTATCAAATAACCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTAGAAGTGCAGTTTGCAGGGCTCAGAGGTATCACTTTCCTAAGGTCAAGGATGCTGATATTGCATGCAGATTAGAAAAGATTTGTGCCGAAGAAGGTCTTGATTTTGAGCAGGCTGCTTTGGACTTTATTGCTACAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGTTTGGTAAAACGATCAAGCTTTCCTTAGTATATGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTCGATTTGCTTGATCTGGCTTTGTCATCTGACACTACTAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAGCTGGCAAATCTCATTATGGACATCCTTGCGGGGAAATGTGAAAATGGTAGTTCTGAAGTCGGGAGTAAATTTTCTAGTAGATATACCTCGGAAGCAGACCTTCAGAAACTAAGCCATGCATTGAGAATACTTTCTGAAACTGAGAAACAGCTTAGAATTTCAAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCCTTCCATGGATGCAAATGATACCAAGTTGTGTTTGAAAGGTGCATGCAATGGAGGGCAGAGCTTGGAGCATGTTGCTACAGATCAGTGTGATAACAGTTCATATAGATTAGGAGTGCTGGAAGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAATCAGCTAAAAACTTTCCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGAAGTCTTACTATTGCTGAGTTGGAGTTCCACCATCGTCACCATGTATCCAAGGCTGAGAAATCATGGAAATTGATTGCAAGTTTCTTGCAGTTCGTGTTGGGTTGTAACGTTGAGTTGAGGATCACTTATGTACCTCGTACTTCTGATTCTAAGTATGCCAAACTGAAGAGGACATCGTTCAGAATCTTTAGTTGTTCACGCAGAATACAGCAGAAATCATTATCGTCTAATGAACTAGGAAGTGAATTAGACTATGCTGATTACACCTCTCAAAATCCAATGATGAAGGATAAAACTCTTACTTCTTCCTTTGATTGTGGATCTCGGGTGCCACATGGAGAGTCTTACCATGGAATTGATGCTGTAAAAAATTTAAGAAGTTGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCTTTTCAAGAGACTATGGGAACATCATGTTCTGGAGTTGAGTCCTCTAAGGATGAGGGATGCAAATGTGCACATGTTCCATCATCAATCCTCGATTCAGATAATAATCAGTCTACCTGTTTTCCTCAAACTCTCTGGCTACAAAAGAAGTTCCGTACTTCACATTCATCCAAGTTGACTTTTCAGGGTATCCAACAACAGAAAGATTTTGTTTTATCCATCCCAAACTGTACATGTTCTGAGACATATACCTATGCTAATTAA 2913 0.4047 MPQWHCLLIAPCSSLSEDKIMMDGRRHSVDIPISKTLVALRRVRSLRDPSTNPMSKLSTLVDNVHWENDGLGNGISLLFPDAARACDSDDNVAFRSRDLGYKGQKEQGAADFELNCGMLKSRLKPSGMSCHGGKQDDEQVHSDPNRQCISGSKSPSESCGSNHGGKGPPSNNFKDGESCYRATTRTSQLGRIDHSRLAIRKNQVKPSEVVGGIVSHLGSPCLSVRDTFSPHGASVGINQDFDVLDNNDDGCGISCCWSKSPRFREPNLYSEMEDRPLILHSIDDTDLHGHRSMRDNGGEISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVQEQRPCGLCRECILFFSGRSKDVKEVDSVRINRTDQVKSLVKNACIPPVSSRFKVFIIDECQLLNGETWASLSNNLENLSQHVVFVMITPDLDKLPRSAVCRAQRYHFPKVKDADIACRLEKICAEEGLDFEQAALDFIATKSCGSVRDAEMMLDQLSLFGKTIKLSLVYELTGVISDDELLDLLDLALSSDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGSSEVGSKFSSRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLQLSSVDYPSMDANDTKLCLKGACNGGQSLEHVATDQCDNSSYRLGVLEDHKGTLDSIWYKATEICQSNQLKTFLRKKGKLSSLHVDRSLTIAELEFHHRHHVSKAEKSWKLIASFLQFVLGCNVELRITYVPRTSDSKYAKLKRTSFRIFSCSRRIQQKSLSSNELGSELDYADYTSQNPMMKDKTLTSSFDCGSRVPHGESYHGIDAVKNLRSCEGNLLSSGERFLNRSFQETMGTSCSGVESSKDEGCKCAHVPSSILDSDNNQSTCFPQTLWLQKKFRTSHSSKLTFQGIQQQKDFVLSIPNCTCSETYTYAN. 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02923 970 Gene3D - 484 546 - -
Seca4g02923 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 532 IPR027417 -
Seca4g02923 970 FunFam Protein STICHEL-like 1 isoform C 547 660 - -
Seca4g02923 970 NCBIfam DNA polymerase III subunit gamma/tau 309 656 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca4g02923 970 Gene3D - 547 660 - -
Seca4g02923 970 CDD HLD_clamp_pol_III_gamma_tau 483 546 IPR045085 -
Seca4g02923 970 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 310 744 - -
Seca4g02923 970 SUPERFAMILY post-AAA+ oligomerization domain-like 548 657 IPR008921 GO:0003677|GO:0006260
Seca4g02923 970 FunFam DNA polymerase III subunit gamma/tau 484 546 - -
Seca4g02923 970 MobiDBLite consensus disorder prediction 125 178 - -
Seca4g02923 970 Gene3D - 303 481 IPR027417 -
Seca4g02923 970 MobiDBLite consensus disorder prediction 144 168 - -
Seca4g02923 970 Pfam DNA polymerase III, delta subunit 325 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02923 Seca-Chr4 50298761 50304047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02923 300 548 Core DNA Replication Machinery Family AT1G21690 25.397 1.72e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02923 - - gmx:100812040 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02923 4 50298761 50304047 Seca4g02923 4 50298761 50304047 ECH
Seca12g01671 12 18230010 18234878 Seca4g02923 4 50298761 50304047 PCT