Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02921 ATGGTGGGTGAGGTTTTCCCCTGGTTGAAATCGCTTCCGGTGGCGTTGGAGTACCGGTCGAGCGCGCCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTGTAAGATCATTCCTCCGATTCCCCCTTCCCTAAGAAAACCGCAATTTCCAACCTGA 189 0.4921 MVGEVFPWLKSLPVALEYRSSAPEFQDPIGYIFKIEKEASKYGICKIIPPIPPSLRKPQFPT. 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02921 62 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 56 - -
Seca4g02921 62 Pfam jmjN domain 19 49 IPR003349 -
Seca4g02921 62 ProSiteProfiles JmjN domain profile. 15 56 IPR003349 -
Seca4g02921 62 SMART JmjN_1 14 55 IPR003349 -
Seca4g02921 62 Gene3D Cupin 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02921 Seca-Chr4 50266153 50266341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02921 4 60 C2H2 Transcription Factor Family AT5G04240 57.895 5.18e-17 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca4g02921 JmjN 1.3e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02921 - - gmx:100775271 99.7525